BioLiP

>protein
SMPRFVVQEHHARRLHWDLRLEMDNVLKSWALPKGVPEKRGVKRLAIETEDHDLSYIDFEGRIPEGMYGAGEVKIWDSGE
YELLERTENKIKFLAKGRKMNGEYVLIKTKVGWLLMKA

The query sequence (length=118) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

#	Hit	Hit length	Aligned length	Identity (normalized by query)	Identity (normalized by hit)	Identity (normalized by aligned length)	E-value	Homologs to hit
1	3p4h:A	118	118	1.0000	1.0000	1.0000	2.68e-84	3ta5:A, 3ta7:A
2	3p43:A	124	119	0.6017	0.5726	0.5966	3.62e-45
3	5dmp:A	169	133	0.5254	0.3669	0.4662	1.99e-33
4	3n9b:B	157	125	0.4831	0.3631	0.4560	4.28e-31	3n9b:A, 3n9d:A
5	8f5o:C	1179	71	0.1780	0.0178	0.2958	0.14	8f5p:C
6	8a5q:U	606	72	0.2034	0.0396	0.3333	0.15	8a5d:U, 8a5p:U
7	5men:D	200	107	0.1949	0.1150	0.2150	0.29	4e41:I, 2iam:C, 2ian:D, 2ian:I, 2ian:N, 2ian:S, 4mnq:D, 6r2l:D
8	3wqm:A	294	46	0.1356	0.0544	0.3478	0.54	4cmx:A, 4cmx:B, 4kt8:A, 3wqk:A, 3wql:A, 3wql:B, 3wql:C, 3wql:D, 3wqn:A
9	8zpt:R	292	72	0.1864	0.0753	0.3056	1.2	8zps:R
10	7l79:H	229	50	0.1102	0.0568	0.2600	1.8
11	4dnr:A	1031	57	0.1356	0.0155	0.2807	3.3	3k0i:A, 7kf6:A, 7kf6:B, 7kf6:C, 7kf7:B, 7kf8:B, 7kf8:C, 3t53:A
12	7mq8:LS	453	46	0.1271	0.0331	0.3261	4.3	7mq9:LS, 7mqa:LS
13	4dik:A	402	46	0.1271	0.0373	0.3261	5.8	4dik:B, 4dil:A, 4dil:B, 5v8s:A, 5v8s:B, 1vme:A, 1vme:B
14	6ska:D	347	45	0.1271	0.0432	0.3333	7.1	2jxa:A
15	3gob:A	342	67	0.1864	0.0643	0.3284	8.9	3gb4:A, 3gb4:B, 3gb4:C, 3gke:A, 3gke:B, 3gl0:A, 3gl0:B, 3gl2:A, 3gl2:B, 3gob:B, 3gob:C, 3gte:A, 3gte:B, 3gte:C, 3gts:A, 3gts:B, 3gts:C, 6vsh:A, 6vsh:B

[Back]