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BioLiP
>protein
SMPKPIYSYSILIFMALKNSKTGSLPVSEIYNFMTEHFPYFKTAPDGWKNSVRHNLSLNKCFEKVEKGCLWALNPAKIDK
MQEELQKWK

The query sequence (length=89) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6el8:A 89 89 0.9663 0.9663 0.9663 3.77e-59 6el8:D
2 6ncm:A 91 85 0.5730 0.5604 0.6000 6.63e-32 6nce:A, 6ncm:B
3 8bzm:E 95 88 0.4270 0.4000 0.4318 1.43e-21 8bzm:I, 8bzm:A, 8bzm:J
4 7cby:C 100 83 0.4270 0.3800 0.4578 1.75e-20
5 6ako:C 97 80 0.4045 0.3711 0.4500 3.36e-20 6akp:C, 6lbm:C, 6o3t:A, 6o3t:B
6 2c6y:A 98 88 0.4157 0.3776 0.4205 1.72e-19 2c6y:B
7 7vov:A 93 83 0.4270 0.4086 0.4578 2.84e-19 7vou:C, 7vov:B
8 2a07:J 83 83 0.3708 0.3976 0.3976 2.19e-18 2a07:K, 2a07:F, 2a07:G, 2a07:H, 2a07:I, 2as5:F, 2as5:G
9 8vfy:O 102 79 0.3820 0.3333 0.4304 1.23e-16 8vfz:O, 8vfz:P, 8vg1:O, 8vg2:O, 7vox:A, 7vox:C, 7vox:H, 7vox:B, 1vtn:C
10 7yze:A 87 79 0.3820 0.3908 0.4304 1.35e-16 5x07:F, 5x07:C, 5x07:L, 5x07:I, 7yzf:C
11 3qrf:G 82 79 0.3371 0.3659 0.3797 2.26e-16 3qrf:F, 3qrf:H, 3qrf:I, 4wk8:F, 4wk8:G
12 2hdc:A 97 83 0.4045 0.3711 0.4337 2.49e-16
13 7tdw:A 90 73 0.3371 0.3333 0.4110 2.99e-16 8sro:A, 8sro:C, 8sro:D, 8sro:B, 8srp:J, 8srp:G, 8srp:E, 8srp:D, 8srp:B, 8srp:A, 8srp:F, 8srp:C, 7tdx:A
14 7yza:A 122 84 0.3933 0.2869 0.4167 2.46e-14 7yz7:A, 7yzc:A, 7yzd:A
15 3g73:B 95 78 0.3371 0.3158 0.3846 5.18e-14 7fj2:A, 7fj2:B, 7fj2:E, 7fj2:F, 3g73:A
16 7yzb:A 125 91 0.3483 0.2480 0.3407 9.95e-14
17 3co6:C 91 78 0.3820 0.3736 0.4359 1.01e-13 3co7:C, 3co7:F, 3coa:C, 3coa:F, 5dui:A, 5dui:B, 6lbi:C, 6lbi:D, 6lbi:G, 6lbi:H, 6lbi:K, 6lbi:L, 4lg0:A
18 2uzk:A 97 78 0.3708 0.3402 0.4231 6.54e-13 2uzk:C
19 7yzg:A 121 83 0.3371 0.2479 0.3614 8.60e-13
20 3l2c:A 85 77 0.3596 0.3765 0.4156 1.48e-11
21 3bg6:A 577 25 0.1573 0.0243 0.5600 0.012 3bg6:B, 3bg6:C, 3bg6:D, 3bg6:E, 3bg6:F, 3bg6:G, 3bg6:H, 3bg7:A, 3bg7:B, 3bg7:C, 3bg7:D, 3bg7:E, 3bg7:F, 3bg7:G, 3bg7:H, 3bly:A, 2f5v:A, 2f6c:A, 3fdy:A, 2igk:A, 2igk:B, 2igk:C, 2igk:D, 2igk:E, 2igk:F, 2igk:G, 2igk:H, 2igm:A, 2igm:B, 2igm:D, 2igm:C, 2igm:E, 2igm:F, 2igm:G, 2igm:H, 2ign:A, 2ign:B, 2ign:D, 2ign:C, 2ign:E, 2ign:F, 2ign:H, 2ign:G, 2igo:A, 2igo:B, 2igo:D, 2igo:C, 2igo:E, 2igo:F, 2igo:H, 2igo:G, 3k4b:A, 3k4c:A, 3k4c:B, 3k4c:C, 3k4c:D, 3k4j:A, 3k4k:A, 3k4l:A, 3k4l:B, 3k4m:A, 3k4m:B, 3k4m:C, 3k4m:D, 3k4m:E, 3k4m:F, 3k4m:G, 3k4m:H, 3k4n:A, 3k4n:B, 3lsh:A, 3lsh:B, 3lsh:C, 3lsh:D, 3lsi:A, 3lsi:B, 3lsk:A, 3lsk:B, 3lsk:C, 3lsk:D, 3lsm:A, 3lsm:B, 4moe:A, 4moe:B, 4moe:C, 4moe:D, 4mof:A, 4mog:A, 4moh:A, 4moi:A, 4moi:B, 4moj:A, 4moj:B, 4moj:C, 4moj:D, 4mok:A, 4mok:B, 4mok:C, 4mok:D, 4mol:A, 4mol:B, 4mol:C, 4mol:D, 4mom:A, 4mom:B, 4mom:C, 4mom:D, 4moo:A, 4mop:A, 4mop:B, 4mop:C, 4mop:D, 4moq:A, 4moq:B, 4mor:A, 4mor:B, 4mor:C, 4mor:D, 4mos:A, 3pl8:A, 1tt0:A, 1tt0:B, 1tt0:C, 1tt0:D, 1tzl:A, 1tzl:B, 1tzl:C, 1tzl:D, 1tzl:E, 1tzl:F, 1tzl:G, 1tzl:H
22 7eo3:A 282 44 0.1798 0.0567 0.3636 2.9
23 5bnt:C 371 29 0.1011 0.0243 0.3103 6.2 5bnt:B, 5bnt:A, 5bnt:D
24 5cfv:A 484 47 0.1573 0.0289 0.2979 6.9 5ihj:A
25 8v47:H 306 65 0.1685 0.0490 0.2308 7.1 8v48:H, 8v48:K
26 8w8j:A 572 29 0.1011 0.0157 0.3103 8.0 8w8j:B, 8w8l:A, 8w8l:B, 8w9i:A, 8w9i:B
27 8b6f:AL 218 18 0.0787 0.0321 0.3889 9.4 8bqs:AL, 8gym:s8, 8gym:S8, 8gzu:s8, 8gzu:S8, 7tgh:S8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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