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BioLiP
>protein
SMNGVLIPHTPIAVDFWSLRRAGTARLFFLSHMHSDHTVGLSSTWARPLYCSPITAHLLHRHLQVSKQWIQALEVGESHV
LPLDEIGQETMTVTLLDANHCPGSVMFLFEGYFGTILYTGDFRYTPSMLKEPALTLGKQIHTLYLDNTNCNPALVLPSRQ
EAAHQIVQLIRKHPQHNIKIGLYSLGKESLLEQLALEFQTWVVLSPRRLELVQLLGLADVFTVEEKAGRIHAVDHMEICH
SNMLRWNQTHPTIAILPTSRKIHSSHPDIHVIPYSDHSSYSELRAFVAALKPCQVVPIVSRRPCGGFQDSLSPR

The query sequence (length=314) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7a1f:L 335 313 0.9968 0.9343 1.0000 0.0 7a1f:A, 5aho:A
2 8c8b:A 341 324 0.3631 0.3343 0.3519 3.68e-47 5ahr:A, 4b87:A, 8c8d:A, 8c8s:A, 8cew:A, 8cf0:A, 8cg9:A, 5nzw:A, 5nzx:A, 5nzy:A, 5q1j:A, 5q1k:A, 5q1l:A, 5q1m:A, 5q1n:A, 5q1o:A, 5q1p:A, 5q1q:A, 5q1r:A, 5q1s:A, 5q1t:A, 5q1u:A, 5q1v:A, 5q1w:A, 5q1x:A, 5q1y:A, 5q1z:A, 5q20:A, 5q22:A, 5q23:A, 5q24:A, 5q25:A, 5q26:A, 5q27:A, 5q28:A, 5q29:A
3 7sgl:D 406 356 0.3376 0.2611 0.2978 1.81e-28 7abs:A, 7af1:A, 7afs:A, 7afu:A, 7agi:A, 7apv:A, 6tt5:AAA, 6wnl:A, 6wnl:B, 6wo0:A
4 2ycb:B 635 164 0.1465 0.0724 0.2805 9.15e-06 2ycb:A
5 4xww:A 545 159 0.1338 0.0771 0.2642 5.53e-05 4xwt:A, 4xwt:B, 4xww:B
6 3af5:A 638 180 0.1497 0.0737 0.2611 1.27e-04 3af6:A
7 2xr1:B 611 167 0.1274 0.0655 0.2395 0.002 2xr1:A
8 9bct:M 648 181 0.1465 0.0710 0.2541 0.005 9bct:J, 9bcu:J, 9bcu:M
9 3zq4:A 550 173 0.1306 0.0745 0.2370 0.006 3zq4:C, 3zq4:D, 3zq4:E
10 3t3o:A 553 228 0.1752 0.0995 0.2412 0.009 3bk1:A, 3bk2:A, 3t3n:A
11 5a0t:A 454 180 0.1624 0.1123 0.2833 0.014 5a0t:B, 5a0v:A, 5a0v:B
12 6k6w:C 444 107 0.0796 0.0563 0.2336 0.068 6k6w:A, 6k6w:B, 6k6w:D
13 6k6s:A 443 158 0.1210 0.0858 0.2405 0.31 6k6s:B
14 2g0w:B 285 72 0.0732 0.0807 0.3194 1.8 2g0w:A
15 6jka:C 228 51 0.0541 0.0746 0.3333 2.1 4c1f:A, 4c1f:B, 4c1g:A, 4c1g:B, 1dd6:A, 1dd6:B, 1ddk:A, 2doo:A, 2doo:B, 7dtm:A, 7dtm:B, 7dtm:C, 7dtm:D, 7dtn:A, 7dtn:B, 7dtn:C, 7dtn:D, 5ev6:A, 5ev6:B, 5ev6:C, 5ev6:D, 5ev8:A, 5ev8:C, 5ev8:B, 5ev8:D, 5ewa:A, 5ewa:B, 5ewa:C, 5ewa:D, 4f6h:A, 4f6z:A, 5hh4:A, 5hh4:B, 5hh4:C, 5hh4:D, 8hyb:A, 8hyb:B, 8hyb:C, 8hyb:D, 8jao:A, 8jao:B, 6jed:A, 1jje:A, 1jje:B, 1jjt:A, 1jjt:B, 6jka:A, 6jka:B, 6jka:D, 6lbl:A, 4uam:A, 4uam:B, 4uam:C, 4uam:D, 1vgn:A, 1vgn:B, 1wuo:A, 1wuo:B, 1wuo:C, 1wuo:D, 1wup:A, 1wup:B, 1wup:C, 1wup:D, 3wxc:A, 3wxc:B, 7wzu:A, 7wzu:B, 7wzu:C, 7wzu:D, 7xhw:A, 7xhw:B, 7xhw:C, 7xhw:D, 7xhx:A, 7xhx:B, 7xhx:C, 7xhx:D, 8y0s:A, 8y0s:B, 8y0s:C, 8y0s:D, 5y5b:A, 7yh9:A, 7yh9:B, 7yh9:C, 7yh9:F, 7yh9:D, 7yh9:E, 7yha:A, 7yha:B, 7yha:C, 7yha:D, 8z5l:A, 8z5l:B, 8z5l:C, 8z5l:D, 6zyr:A, 6zyr:B, 6zyr:C, 6zyr:D, 6zys:A, 6zys:B, 6zys:C, 6zys:D
16 7xgt:B 275 172 0.1465 0.1673 0.2674 2.4 7xgt:A
17 3j16:A 386 102 0.0764 0.0622 0.2353 2.6 5m1j:A1
18 2ox9:C 131 48 0.0510 0.1221 0.3333 2.8 2ox9:A, 2ox9:B, 2ox9:D
19 7kzv:V 1155 64 0.0701 0.0190 0.3438 3.3 8a9k:B
20 6vaa:B 1153 64 0.0701 0.0191 0.3438 3.4
21 6r84:R 360 127 0.0860 0.0750 0.2126 3.5 6r86:R, 6r87:R
22 4v7n:BB 388 83 0.0669 0.0541 0.2530 3.8 4v7n:AA, 4v7n:AB, 4v7n:AC, 4v7n:AD, 4v7n:AE, 4v7n:AF, 4v7n:AG, 4v7n:AH, 4v7n:AI, 4v7n:AJ, 4v7n:AK, 4v7n:AL, 4v7n:AM, 4v7n:AN, 4v7n:AO, 4v7n:AP, 4v7n:AQ, 4v7n:AR, 4v7n:BA, 4v7n:BC, 4v7n:BD, 4v7n:BE, 4v7n:BF, 4v7n:BG, 4v7n:BH, 4v7n:BI, 4v7n:BJ, 4v7n:BK, 4v7n:BL, 4v7n:BM, 4v7n:BN, 4v7n:BO, 4v7n:BP, 4v7n:BQ, 4v7n:BR
23 6l3s:A 218 51 0.0510 0.0734 0.3137 4.2 6l3s:B
24 6r79:A 220 55 0.0510 0.0727 0.2909 4.5 6r73:A, 6r73:B, 6r78:A, 6r78:B, 6r79:D, 6r79:B, 6r79:C, 6rzr:A, 6rzr:B, 6rzs:A, 6rzs:B, 6s0h:A, 6s0h:B, 4ubq:A, 6yi4:AAA, 6yi4:BBB, 6yi4:CCC
25 2vh9:A 266 52 0.0510 0.0602 0.3077 6.3 2vh9:B
26 3wgx:B 112 48 0.0478 0.1339 0.3125 6.3 3wgx:A
27 3i6i:A 302 41 0.0478 0.0497 0.3659 6.5 3i52:A, 3i6q:A
28 7sn8:K 588 116 0.0955 0.0510 0.2586 6.6 8uic:K
29 3a4y:A 431 122 0.0924 0.0673 0.2377 7.3 3a4y:B, 3a4y:C, 3a4y:D, 2dkf:A, 2dkf:B, 2dkf:C, 2dkf:D, 3idz:A, 3idz:B, 3idz:C, 3idz:D, 3ie0:A, 3ie0:B, 3ie0:C, 3ie0:D, 3ie1:A, 3ie1:B, 3ie1:C, 3ie1:D, 3ie2:A, 3ie2:B, 3ie2:C, 3ie2:D, 3iek:A, 3iek:B, 3iek:C, 3iek:D, 3iel:A, 3iel:B, 3iel:C, 3iel:D, 3iem:A, 3iem:B, 3iem:D, 3iem:C
30 2ox8:A 129 43 0.0446 0.1085 0.3256 7.7 2ox8:B, 2ox8:C, 2ox8:D
31 7bmk:A 406 109 0.0860 0.0665 0.2477 8.9 7bmk:B, 6hv0:A, 6hx1:A, 3p23:A, 3p23:B, 3p23:C, 3p23:D, 4pl3:A, 4pl3:B, 4pl4:A, 4pl4:B, 4pl4:C, 4pl5:B, 4pl5:A, 4pl5:C, 4pl5:D, 4u6r:A, 6urc:A, 6urc:B, 8uvl:A, 6w3e:B, 6w3k:A, 6xdb:A, 6xdd:A, 6xdd:B, 6xdf:A, 4yzc:A, 4yzc:B, 4yzd:A, 4yzd:B, 4z7h:A, 4z7h:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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