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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SMLYLLDKSDYPKVKHLVRTKEEKSDVPLNAVINGTNVGNIYVDDPDHPKAALVDAVGTTCFLIGDASSPVFGEHLKDCI
ENQLKDQCLESGGSYFIATLFDKEWEKVLENAISHREYEPDYEFYHEFDKDKFNKVKSNYRSLTNEYTIKRMDKELIQND
SDDTLRSCLSDFWDSIDDFLTKGVGFCVIKDEQVISSCFTCYVDGNNHEISVETYDEEEQNKGLATKACEVYLEYCIENG
ITPHWSTFETNVESVNLASKLGFEYRFKLKTYEFEY

The query sequence (length=276) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7b3a:A 276 276 1.0000 1.0000 1.0000 0.0
2 3ll9:B 249 35 0.0507 0.0562 0.4000 0.88 3ll9:A
3 1mqq:A 675 64 0.0616 0.0252 0.2656 1.2 1k9e:A, 1k9f:A, 1l8n:A
4 3mmg:A 217 69 0.0652 0.0829 0.2609 4.2 3mmg:B
5 7ovu:A 196 59 0.0616 0.0867 0.2881 5.4
6 5kwk:B 457 41 0.0507 0.0306 0.3415 6.7 5koe:A, 5kor:B, 5kor:C, 5kor:A, 5kor:D, 5kwk:A, 5kx6:A, 5kx6:B
7 8wnf:A 918 115 0.0942 0.0283 0.2261 10.0 8wng:A, 8wni:A, 8wnj:A, 8wo2:A, 8wo3:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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