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BioLiP
>protein
SMGKDEALEKDLNDVSKEINLMLSTYAKLLSERAAVDASYIDEIDELFKEANAIENALIQKREELRQRFTAIANTLHR

The query sequence (length=78) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6hk9:B 78 78 1.0000 1.0000 1.0000 3.15e-51 6hk9:A
2 3idq:A 272 53 0.1795 0.0515 0.2642 1.3
3 6v6q:C 279 21 0.1410 0.0394 0.5238 1.6 8h75:C, 8h75:D, 4j95:D, 8stg:A, 8stg:B, 8u1f:A, 8u1f:B, 5ugl:B, 5uhn:B, 6v6q:D
4 7nrc:So 347 50 0.2179 0.0490 0.3400 1.8
5 4j96:B 305 21 0.1410 0.0361 0.5238 2.0 6agx:A, 6agx:B, 6agx:C, 6agx:D, 3b2t:A, 3b2t:B, 3cly:A, 8e1x:A, 8e1x:B, 5eg3:A, 8h75:A, 8h75:B, 4j95:A, 4j95:B, 4j95:C, 4j97:A, 4j97:B, 4j97:C, 4j97:D, 4j98:B, 4j99:A, 4j99:B, 4j99:C, 4j99:D, 7kia:A, 7kia:B, 7kie:A, 7kie:B, 6lvk:A, 6lvk:B, 6lvl:A, 6lvl:B, 1oec:A, 7ozy:AAA, 7ozy:BBB, 2pvy:A, 2pvy:B, 2pvy:C, 2pvy:D, 2pwl:A, 2pwl:B, 2py3:A, 2py3:B, 2pz5:A, 2pz5:B, 2pzp:A, 2pzp:B, 2pzr:A, 2pzr:B, 2q0b:A, 2q0b:B, 3ri1:A, 3ri1:B, 8swe:A, 8swe:B, 5ugl:A, 5ugx:B, 5ugx:A, 5uhn:A, 5ui0:B, 6v6q:A, 6v6q:B
6 2h1n:A 566 45 0.1538 0.0212 0.2667 2.5 2h1j:A, 2h1j:B, 2h1n:B
7 7sq0:A 306 52 0.2051 0.0523 0.3077 2.7 7sq0:B
8 7spz:A 328 52 0.2051 0.0488 0.3077 2.9 7spy:A
9 5kxq:A 327 38 0.1795 0.0428 0.3684 3.4 5kxq:B, 5kxq:C, 5kxq:D
10 5ky2:A 355 38 0.1795 0.0394 0.3684 3.4 5kxh:A, 5ky0:A, 5ky3:A, 5ky4:A, 5ky5:A, 5ky7:A, 5ky8:A, 5ky9:A, 5uxh:A, 5uxh:B
11 1xjq:A 563 56 0.2692 0.0373 0.3750 3.7 2pey:B, 1xnj:A
12 1xjq:B 590 56 0.2692 0.0356 0.3750 3.7 8i1m:A, 2ofw:A, 2ofw:B, 2ofw:C, 2ofw:D, 2ofw:E, 2ofw:F, 2ofw:G, 2ofw:H, 2ofx:A, 2ofx:B, 2pey:A, 2pez:A, 2pez:B, 2qjf:A, 2qjf:B, 1x6v:B, 1xnj:B
13 1uf2:A 967 41 0.1538 0.0124 0.2927 4.7
14 9cd7:A 276 21 0.1282 0.0362 0.4762 4.7 8udv:C
15 8yp3:A 471 40 0.1667 0.0276 0.3250 5.8 8yp3:B, 8yp3:C, 8yp3:D
16 6pnx:B 294 21 0.1282 0.0340 0.4762 5.8 9cd7:B, 9cd7:C, 7dhl:A, 4k33:A, 6lvm:A, 6pnx:A, 8udt:A, 8udt:B, 8udt:C, 8udu:A, 8udu:B, 8udv:A, 8udv:B
17 6fsz:MM 978 28 0.1667 0.0133 0.4643 8.6 7ajt:EN, 7aju:EN, 6ft6:MM, 5ooq:A, 5ooq:B, 2xgj:A
18 2xgj:B 777 28 0.1667 0.0167 0.4643 8.8
19 4i6z:B 200 30 0.1282 0.0500 0.3333 9.9 4i76:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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