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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SMDIEFMAQRAFPNPYADYNKSLAEGYFDAAGRLTPEFSQRLTNKIRELLQQMERGLKSADPRDGTGYTGWAGIAVLYLH
LYDVFGDPAYLQLAHGYVKQSLNCLTKRSITFLCGDAGPLAVAAVLYHKMNNEKQAEDCITRLIHLNKIDPHAPNEMLYG
RIGYIYALLFVNKNFGVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAAHGLAGIYYYLMQPSLQ
VSQGKLHSLVKPSVDYVCQLKFPSGNYPPCIGDNRDLLVHWCHGAPGVIYMLIQAYKVFREEKYLCDAYQCADVIWQYGL
LKKGYGLCHGSAGNAYAFLTLYNLTQDMKYLYRACKFAEWCLEYGEHGCRTPDTPFSLFEGMAGTIYFLADLLVPTKARF
PAFEL

The query sequence (length=405) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3e6u:A 409 405 1.0000 0.9902 1.0000 0.0 8czk:A, 8czk:B, 8czl:A, 8czl:B, 8d0v:A, 8d0v:B, 8d19:A, 8d19:B, 3e6u:C, 3e6u:B, 3e6u:D, 3e73:A, 3e73:B
2 6wq1:A 396 400 0.5630 0.5758 0.5700 1.54e-172 6wq1:B, 6wq1:C, 6wq1:D
3 3t33:A 407 373 0.3605 0.3587 0.3914 2.57e-75
4 6st5:A 913 388 0.1951 0.0865 0.2036 0.002
5 8byk:A 437 85 0.0568 0.0526 0.2706 0.16
6 2fdc:A 505 83 0.0642 0.0515 0.3133 0.81
7 2g02:A 404 190 0.0963 0.0965 0.2053 0.91 2g0d:A
8 6o8h:A 571 83 0.0642 0.0455 0.3133 1.0 6o8g:B, 6o8g:C
9 6o8e:A 592 83 0.0642 0.0439 0.3133 1.0 1d9z:A, 2fdc:B, 6o8e:B, 6o8f:A, 6o8f:B, 6o8g:A
10 5u7w:A 404 26 0.0321 0.0322 0.5000 3.5 5u7v:A
11 3bs0:A 414 94 0.0691 0.0676 0.2979 6.2 3brz:A, 3bs0:B
12 8sam:A 859 42 0.0321 0.0151 0.3095 6.5 8sam:B, 8sao:B, 8sao:D
13 7dia:A 1072 62 0.0395 0.0149 0.2581 6.9 3s5k:A, 8wyt:A, 8wyx:A, 8wyy:A
14 6oxd:A 736 53 0.0395 0.0217 0.3019 6.9 6oxc:A
15 3s5m:A 1094 62 0.0395 0.0146 0.2581 7.0 7di7:A, 7dij:A, 8ho4:A, 8ho5:A, 3s5h:A, 7vpe:A, 8wxw:A, 8wxz:A, 8wyu:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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