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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SLTCDKLPKVIPPGIDAFTSHNPFEFSYVLTDDLDCTARVYVQPVHGLTNYSGTAFDIKGTHITINDFTIGADGLTAYLT
NCDTGEKQVWHFQYVDLGDPQGANYCAYSCNGPQIAEYKCTTNTGYISPKQLQAVKEARSVPNGDKIHLAQVDCPPHLYC
PLYY

The query sequence (length=164) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7bpo:A 165 164 1.0000 0.9939 1.0000 2.77e-122 7bpo:B, 7br1:A, 7br1:B
2 7yax:A 166 163 0.5305 0.5241 0.5337 4.69e-59 7yax:B, 7yax:C, 7yax:D, 7ycb:A, 7ycb:B, 7ycb:C, 7ycb:D, 7ycd:A, 7ycd:B, 7ycd:C, 7ycd:D, 7ycf:A, 7ycf:B, 7ycf:C, 7ycf:D, 7yct:A, 7yct:B, 7yct:C, 7yct:D
3 6kfa:A 162 163 0.4939 0.5000 0.4969 3.99e-52 6kfb:A, 6kfd:A
4 4uuv:A 96 66 0.1159 0.1979 0.2879 0.95 4bnc:A, 4uno:A, 4uuv:D, 4uuv:G, 4uuv:J, 4uuv:M, 4uuv:P, 4uuv:S, 4uuv:V
5 3dy5:A 1002 42 0.1037 0.0170 0.4048 0.99 3dy5:C, 1u5u:A, 1u5u:B
6 5vsu:A 387 35 0.0671 0.0284 0.3143 1.7 6aso:A, 2kh9:A, 4n0t:A, 5tf6:A, 5tf6:C
7 1wky:A 446 26 0.0793 0.0291 0.5000 3.2
8 3bc9:A 585 58 0.0732 0.0205 0.2069 7.0 3bcd:A, 3bcf:A
9 7bvt:A 391 65 0.1463 0.0614 0.3692 7.4
10 7p2d:A 751 41 0.0915 0.0200 0.3659 7.7 7akk:D, 7akk:H, 1bho:1, 1bho:2, 1ido:A, 1jlm:A, 1m1u:A, 3q3g:G, 3q3g:E, 3q3g:I, 3q3g:L, 3qa3:G, 3qa3:E, 3qa3:I, 3qa3:L, 6rhw:C, 8voi:A, 4xw2:A
11 3o9z:A 310 27 0.0610 0.0323 0.3704 8.2 3o9z:B, 3o9z:C, 3o9z:D, 3oa0:A, 3oa0:B, 3oa0:C, 3oa0:D
12 4o2z:A 363 38 0.0732 0.0331 0.3158 8.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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