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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SLRFTIDCTNIAEDSIMDVADFEKYIKARLKVNGKVNNLGNNVTFERSKLKLIVSSDVHFSKAYLKYLTKKYLKKNSLRD
WIRVVANEKDSYELRYFRI

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4v6w:CU 116 99 1.0000 0.8534 1.0000 5.90e-68 6xu8:CU
2 6xu6:CU 96 96 0.5556 0.5729 0.5729 6.14e-37 6xu7:CU
3 4v6x:CU 112 99 0.6768 0.5982 0.6768 4.64e-35 7a01:82, 8a3d:O, 5aj0:AU, 8b5l:U, 8b6c:U, 9bdl:AL22, 9bdn:AL22, 9bdp:AL22, 7bhp:LU, 8bhf:H1, 8bpo:T2, 8btk:BU, 7cpu:LU, 7cpv:LU, 4d5y:U, 4d67:U, 6d90:U, 6d9j:U, 9f1b:BU, 9f1c:BU, 9f1d:BU, 7f5s:LU, 8fkz:LF, 8fl2:LF, 8fl3:LF, 8fl4:LF, 8fl6:LF, 8fl7:LF, 8fl9:LF, 8fla:LF, 8flb:LF, 8flc:LF, 8fld:LF, 8fle:LF, 8flf:LF, 9fq0:LU, 6frk:U, 6ftg:U, 6fti:U, 6ftj:U, 8g5y:LU, 8g5z:LU, 8g60:LU, 8g61:LU, 8g6j:LU, 8glp:LU, 6gz3:AU, 6gz4:AU, 6gz5:AU, 6hcf:U3, 6hcj:U3, 6hcm:U3, 6hcq:U3, 8idt:d, 8idy:d, 8ie3:d, 8ifd:2O, 8ife:2O, 8ine:d, 8inf:d, 8ink:d, 6ip5:2O, 6ip6:2O, 6ip8:2O, 8ipd:d, 8ipx:d, 8ipy:d, 8ir1:d, 8ir3:d, 3j7o:U, 3j7p:U, 3j7q:U, 3j7r:U, 3j92:U, 3jag:U, 3jah:U, 3jai:U, 3jaj:U, 3jan:U, 8jdj:Z, 8jdk:Z, 8jdl:Z, 8jdm:Z, 8k2c:LU, 5lks:LU, 6lqm:d, 6lsr:d, 6lss:d, 7ls1:O2, 7ls2:O2, 6lu8:d, 5lzs:U, 5lzt:U, 5lzu:U, 5lzv:U, 5lzw:U, 5lzx:U, 5lzy:U, 5lzz:U, 7mdz:U, 6mtb:U, 6mtc:U, 6mtd:U, 6mte:U, 7nfx:U, 7nwg:U3, 7nwh:U, 7nwi:U, 7o7y:BU, 7o7z:BU, 7o80:BU, 7o81:BU, 7obr:U, 8ohd:LU, 8oj0:LU, 8oj5:LU, 8oj8:LU, 6ole:V, 6olf:V, 6olg:AU, 6oli:V, 6olz:AU, 6om0:V, 6om7:V, 7oya:U1, 7oyb:U1, 7oyc:U1, 7oyd:U, 8p2k:BU, 6p5i:AU, 6p5j:AU, 6p5k:AU, 6p5n:AU, 8q7z:BU, 8q87:BU, 8qfd:U, 7qgg:V, 8qoi:LU, 7qvp:LU, 7qvp:MU, 7qwq:U, 7qwr:U, 7qws:U, 6qzp:LU, 6r5q:U, 6r6g:U, 6r6p:U, 6r7q:U, 8rjb:U, 8rjc:U, 8rjd:U, 8scb:U, 6sgc:U2, 6swa:S, 5t2c:O, 6t59:U3, 7tm3:U, 7toq:AL22, 7tor:AL22, 7tut:U, 7ucj:U, 7uck:U, 4ug0:LU, 4ujc:BU, 4ujd:AU, 4uje:CU, 6w6l:V, 6xa1:LU, 7xnx:LU, 7xny:LU, 8xsx:LU, 8xsy:LU, 8xsz:LU, 6y0g:LU, 8y0w:LU, 8y0x:LU, 6y2l:LU, 6y57:LU, 6y6x:LU, 8yoo:LU, 8yop:LU, 6z6l:LU, 6z6m:LU, 6z6n:LU, 7zjw:LX, 7zjx:LX, 6zm7:LU, 6zme:LU, 6zmi:LU, 6zmo:LU, 6zvk:82
4 9bh5:CU 100 97 0.5455 0.5400 0.5567 5.68e-33 9cai:CU
5 8esq:U 98 96 0.5152 0.5204 0.5312 3.97e-29 8esr:U, 8etc:U, 8etg:U, 8eug:U, 8eui:U
6 8i9x:LU 105 100 0.4646 0.4381 0.4600 5.98e-25 8i9y:LU, 8i9z:LU, 8ia0:LU, 7olc:LU, 7old:LU, 8oo0:LU, 8pv1:LU, 8pv2:LU, 8pv3:LU, 8pv4:LU, 8pv5:LU, 8pv6:LU, 8pv7:LU, 8pv8:LU, 8pvk:LU, 8pvl:LU, 7z3n:LU, 7z3o:LU
7 3j79:X 97 97 0.3838 0.3918 0.3918 6.73e-25 3jbn:AX, 3jbo:AX, 3jbp:AX, 8tpu:AX, 5umd:X
8 4v3p:LW 108 102 0.5859 0.5370 0.5686 3.45e-24 8ip8:ZA, 8ipa:ZA, 8ipb:ZA, 8jiv:CU, 4v7e:CU
9 7qiw:W 101 98 0.5455 0.5347 0.5510 1.39e-23 8azw:K, 8b2l:K3, 7qiz:W
10 7r81:W1 101 98 0.4141 0.4059 0.4184 2.20e-23
11 8ova:BV 122 97 0.3939 0.3197 0.4021 6.29e-21 8ove:BV, 4v8m:BV
12 8rxh:LU 122 97 0.3939 0.3197 0.4021 2.42e-20 8a3w:U, 8a98:U, 6az3:U, 3jcs:U, 8rxx:LU, 5t2a:T
13 5xxb:T 99 97 0.4646 0.4646 0.4742 3.18e-20
14 5t5h:V 85 95 0.4040 0.4706 0.4211 9.48e-19
15 4v8p:AM 100 97 0.4646 0.4600 0.4742 1.18e-18 4v8p:DM, 4v8p:FM, 4v8p:HM
16 8p5d:LU0 100 97 0.3636 0.3600 0.3711 1.55e-18 8p60:LU0, 8p60:KU0, 7qca:LU0
17 8bf9:U 84 96 0.5758 0.6786 0.5938 4.16e-17
18 5xy3:U 97 94 0.3232 0.3299 0.3404 1.51e-16
19 8ovj:U 107 100 0.4040 0.3738 0.4000 1.78e-16
20 8hfr:UF 115 96 0.4444 0.3826 0.4583 1.12e-15 8aaf:H, 8agt:H, 8agu:H, 8agv:H, 8agw:H, 8agx:H, 8agz:H, 5apn:U, 5apo:U, 7azy:w, 7b7d:Lq, 8bip:LU, 8bjq:LU, 8bn3:N2, 8bqd:BL, 8bqx:BL, 7bt6:U, 7btb:U, 8ccs:G, 8cdl:G, 8cdr:G, 8ceh:G, 8cf5:G, 8cg8:G, 8cgn:G, 8civ:G, 8cku:G, 8cmj:G, 5dat:N2, 5dat:n2, 5dc3:N2, 5dc3:n2, 5dge:N2, 5dge:n2, 5dgf:N2, 5dgf:n2, 5dgv:N2, 5dgv:n2, 6elz:U, 6em5:U, 8eub:AU, 8evp:AU, 8evq:AU, 8evr:AU, 8evs:AU, 8evt:AU, 8ewb:AU, 8ewc:AU, 5fci:N2, 5fci:n2, 5fcj:N2, 5fcj:n2, 6ft6:U, 5gak:W, 6gq1:U, 6gqb:U, 6gqv:U, 5h4p:U, 6hd7:W, 6hhq:5, 6hhq:CW, 5i4l:N2, 5i4l:n2, 6i7o:BL, 6i7o:YL, 5it7:UU, 3j6x:62, 3j6y:62, 3j77:72, 3j78:72, 3jct:U, 5juo:Z, 5jup:Z, 5jus:Z, 5jut:Z, 5juu:Z, 8k2d:LU, 8k82:LU, 5lyb:N2, 5lyb:n2, 5m1j:U5, 6m62:U, 5mc6:BL, 5mei:5, 5mei:CW, 7mpi:AU, 7mpj:AU, 6n8j:U, 6n8k:U, 6n8l:U, 6n8m:h, 6n8n:h, 6n8o:h, 7n8b:AU, 7nac:U, 7nad:U, 5ndg:N2, 5ndg:n2, 5ndv:N2, 5ndv:n2, 5ndw:N2, 5ndw:n2, 7nrc:LW, 7nrd:LW, 5obm:N2, 5obm:n2, 7of1:U, 7oh3:U, 7ohq:U, 7ohr:U, 7ohv:U, 6oig:U, 5on6:5, 5on6:CW, 7osa:eL22, 7osm:eL22, 8p8m:QU, 8p8n:QU, 8p8u:QU, 8pfr:QU, 6q8y:BL, 6qik:V, 6qt0:V, 6qtz:V, 7r72:U, 7r7a:U, 6r84:W, 6r86:W, 6r87:W, 6ri5:V, 7rr5:LU, 6rzz:V, 6s05:V, 6s47:AW, 6snt:au, 6sv4:BL, 6sv4:YL, 6sv4:ZL, 6t4q:LU, 5t62:h, 5t6r:h, 6t7i:LU, 6t7t:LU, 6t83:Uy, 6t83:F, 5tbw:5, 5tbw:CW, 6tb3:BL, 5tga:N2, 5tga:n2, 5tgm:N2, 5tgm:n2, 6tnu:BL, 7too:AL22, 7top:AL22, 7u0h:U, 4u3m:N2, 4u3m:n2, 4u3n:N2, 4u3n:n2, 4u3u:N2, 4u3u:n2, 4u4n:N2, 4u4n:n2, 4u4o:N2, 4u4o:n2, 4u4q:N2, 4u4q:n2, 4u4r:N2, 4u4r:n2, 4u4u:N2, 4u4u:n2, 4u4y:N2, 4u4y:n2, 4u4z:N2, 4u4z:n2, 4u50:N2, 4u50:n2, 4u51:N2, 4u51:n2, 4u52:N2, 4u52:n2, 4u53:N2, 4u53:n2, 4u55:N2, 4u55:n2, 4u56:N2, 4u56:n2, 4u6f:N2, 4u6f:n2, 7ug6:U, 7uoo:U, 7uqb:U, 7uqz:U, 6uz7:AU, 7v08:U, 4v6i:BW, 4v88:BU, 4v88:DU, 4v8t:U, 4v8y:BU, 4v8z:BU, 8v87:U, 4v91:U, 6woo:U, 6xiq:U, 6xir:U, 8y0u:LU, 6ylg:U, 6ylh:U, 6ylx:U, 6yly:U, 7z34:U, 6z6j:LU, 6z6k:LU, 7zpq:BT, 7zrs:BT, 7zs5:BV, 7zuw:BT, 7zux:ET, 7zw0:LX
21 6zu5:LU0 97 94 0.3636 0.3711 0.3830 3.17e-15
22 6zj3:Lj 101 100 0.4444 0.4356 0.4400 1.23e-13
23 8c3a:5 103 98 0.4040 0.3883 0.4082 7.50e-10 8c3a:BP, 8cq7:5, 8cq7:BP, 8cqw:5, 8cqw:BP, 8cre:5, 8cre:BP, 8oeq:5, 8oeq:BP, 7pzy:5, 7q08:5, 7q0f:5, 7q0p:5, 7q0r:5, 8q5i:5
24 8btd:LV 115 100 0.2626 0.2261 0.2600 7.18e-09 8br8:LV, 8brm:LV, 8bsi:LV, 8bsj:LV, 8btr:LV, 8fru:U, 7pwg:U, 7pwo:U2
25 6rm3:LU0 97 95 0.2525 0.2577 0.2632 2.18e-06
26 7qep:N2 93 104 0.3131 0.3333 0.2981 6.47e-06
27 2wyo:C 496 41 0.1616 0.0323 0.3902 0.051 2wyo:B, 2wyo:D
28 2wyo:A 520 41 0.1616 0.0308 0.3902 0.051
29 1w07:B 658 66 0.2121 0.0319 0.3182 1.1 1w07:A
30 3kqg:A 169 28 0.1212 0.0710 0.4286 2.3 4ak8:A, 4ak8:B, 4ak8:C, 4ak8:D, 3c22:A, 3c22:B, 3c22:C, 3c22:D, 5g6u:A, 5g6u:B, 5g6u:D, 5g6u:C, 3kqg:B, 3kqg:C, 3kqg:D, 3kqg:E, 3kqg:F, 4n32:A, 4n32:B, 4n32:C, 4n32:D, 4n33:A, 4n33:B, 4n33:C, 4n33:D, 4n34:A, 4n34:B, 4n34:C, 4n34:D, 4n35:A, 4n35:B, 4n35:C, 4n35:D, 4n36:A, 4n36:B, 4n36:C, 4n36:D, 4n37:A, 4n37:B, 4n37:C, 4n37:D, 4n38:A, 4n38:B, 4n38:C, 4n38:D, 3p5d:A, 3p5d:B, 3p5d:C, 3p5d:D, 3p5e:A, 3p5e:B, 3p5e:C, 3p5e:D, 3p5f:B, 3p5f:C, 3p5f:A, 3p5f:D, 3p5g:A, 3p5g:B, 3p5g:C, 3p5g:D, 3p5h:B, 3p5h:D, 3p5h:A, 3p5h:C, 3p5i:A, 3p5i:B, 3p5i:C, 3p5i:D, 3p7f:A, 3p7f:B, 3p7f:C, 3p7f:D, 3p7g:A, 3p7g:B, 3p7g:C, 3p7g:D, 3p7h:A, 3p7h:B, 3p7h:C, 3p7h:D, 7ytq:A, 7ytq:B, 7ytq:C, 7ytq:D
31 2fon:B 656 51 0.1818 0.0274 0.3529 2.4 2fon:A, 2fon:C
32 3bga:A 1003 59 0.1919 0.0189 0.3220 3.5 3bga:B
33 2g29:A 385 18 0.1212 0.0312 0.6667 3.5
34 5okz:Q 207 64 0.1515 0.0725 0.2344 3.8
35 6s6b:K 1024 38 0.1515 0.0146 0.3947 6.1 6s8b:K, 6s8e:K, 6s91:K, 6sh8:K, 6shb:K, 6sic:K
36 4cj1:A 544 23 0.0909 0.0165 0.3913 6.4 4cj0:A, 1clc:A
37 3fxx:A 288 30 0.1010 0.0347 0.3333 8.2 3dzq:A, 3fy2:A, 4g2f:A, 4gk2:A, 4gk3:A, 4gk4:A, 6in0:A, 4p4c:A, 4p5q:A, 4p5z:A, 2qo7:A, 2qo9:A, 2qoc:A, 2qoq:A, 4twn:A, 4two:A
38 7ctv:A 299 59 0.1616 0.0535 0.2712 9.1 7ctv:B, 7ctx:A, 7ctx:B
39 1rr8:C 494 24 0.0909 0.0182 0.3750 9.3 1a35:A, 1k4s:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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