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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SLQMIVENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTHLRQKWQQVWQEINVEAKQVKDIMKTLESFKL

The query sequence (length=77) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5ow5:B 77 77 1.0000 1.0000 1.0000 5.59e-52 5ow5:D
2 2gb7:B 295 27 0.1558 0.0407 0.4444 1.6 2fqz:A, 2fqz:B, 2fqz:C, 2fqz:D, 2gb7:A, 2gb7:C, 2gb7:D
3 3rzf:A 541 14 0.1169 0.0166 0.6429 1.7
4 8u9r:B 1060 47 0.1948 0.0142 0.3191 1.9 8u9x:B
5 3k7a:B 1122 47 0.1948 0.0134 0.3191 2.0
6 8tvy:B 1207 47 0.1948 0.0124 0.3191 2.3 3gtg:B, 3gtj:B, 3gtk:B, 8jch:B, 8k5p:B, 7o4k:B, 7o4l:B, 5u5q:B, 5vvr:B, 5vvs:B
7 5c4j:B 1157 47 0.1948 0.0130 0.3191 2.3 4a3b:B, 4a3c:B, 4a3d:B, 4a3e:B, 4a3f:B, 4a3g:B, 4a3i:B, 4a3j:B, 4a3k:B, 4a3l:B, 4a3m:B, 4a93:B, 2b63:B, 2b8k:B, 6blo:B, 6blp:B, 6bm2:B, 6bm4:B, 6bqf:B, 4by1:B, 4by7:B, 2e2j:B, 3gtl:B, 3gtm:B, 3gto:B, 3gtp:B, 3gtq:B, 3h3v:C, 3hou:B, 3hou:N, 3hov:B, 3how:B, 3hox:B, 3hoy:B, 3hoz:B, 6i84:B, 3j0k:B, 2ja5:B, 2ja6:B, 2ja7:B, 2ja7:N, 2ja8:B, 7ked:B, 7kee:B, 7kef:B, 3m3y:B, 3m4o:B, 7ml4:B, 7nkx:B, 7nky:B, 2nvq:B, 2nvt:B, 2nvx:B, 5ot2:B, 3po3:B, 3qt1:B, 2r7z:B, 1r9t:B, 2r92:B, 2r93:B, 7riq:B, 7riw:B, 7rix:B, 7riy:B, 3rzd:B, 3rzo:B, 3s14:B, 3s15:B, 3s16:B, 3s17:B, 3s1m:B, 3s1n:B, 3s1q:B, 3s1r:B, 3s2d:B, 3s2h:B, 1sfo:B, 8ukq:B, 8ukr:B, 8uks:B, 8ukt:B, 8uku:B, 6upx:B, 6upz:B, 6uq0:B, 6uq1:B, 6uq2:B, 6uq3:B, 2vum:B, 4x67:B, 4x6a:B, 1y1v:B, 1y1w:B, 4y52:B, 1y77:B, 4y7n:B
8 6o6c:B 1165 47 0.1948 0.0129 0.3191 2.4 5c44:B, 2e2h:B, 9ja1:B, 2nvz:B, 6upy:B, 2yu9:B
9 4yo2:A 186 25 0.1299 0.0538 0.4000 3.0
10 8gl8:I 624 27 0.1688 0.0208 0.4815 3.1
11 2np0:A 1289 53 0.1818 0.0109 0.2642 3.3 1epw:A, 2etf:A, 2etf:B, 1f31:A, 1f82:A, 6g5f:B, 6g5g:B, 6g5k:A, 6g5k:B, 1g9a:A, 1g9b:A, 1g9c:A, 1g9d:A, 1i1e:A, 4kbb:A, 4kbb:B, 7na9:A, 2nm1:A, 6qns:A, 1s0b:A, 1s0c:A, 1s0d:A, 1s0e:A, 1s0f:A, 7t5f:A, 7t5f:D, 2xhl:A, 3zuq:A, 6zvm:AAA
12 7vgm:A 571 31 0.1299 0.0175 0.3226 5.0
13 7ycx:G 910 26 0.1299 0.0110 0.3846 5.3
14 5x4z:N 1074 31 0.1558 0.0112 0.3871 5.5 5x4z:B, 5x51:B, 5x51:N
15 7pks:g 886 26 0.1299 0.0113 0.3846 5.5 8rbx:g, 8rbz:g
16 7xn7:B 1164 31 0.1558 0.0103 0.3871 5.6 6a5l:B, 6a5o:B, 6a5p:B, 6a5r:B, 6a5t:B, 6a5u:B, 8h0v:B, 8h0w:B, 8he5:B, 6inq:B, 6ir9:B, 6j4w:B, 6j4x:B, 6j4y:B, 6j4z:B, 6j50:B, 6j51:B, 8jh2:B, 8jh3:B, 8jh4:B, 7wbv:B, 7wbw:B, 7wbx:B, 5xog:B, 5xon:B, 7xse:B, 7xsx:B, 7xsz:B, 7xt7:B, 7xtd:B, 7xti:B, 8yfq:B, 8yfr:B
17 7scy:K 96 59 0.1558 0.1250 0.2034 6.6 7scz:K
18 4iaw:A 180 36 0.1429 0.0611 0.3056 9.3 3dsz:A, 3dsz:B, 4iaw:B, 4iaw:C, 4iax:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417