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BioLiP
>protein
SLQMIVENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLDTHLRQKWQQVWQEINVEAKQVKDIMKTLESFK

The query sequence (length=72) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5ow5:B 77 76 1.0000 0.9351 0.9474 3.26e-46 5ow5:D
2 3rzf:A 541 42 0.1944 0.0259 0.3333 0.64
3 6s3t:A 374 36 0.1944 0.0374 0.3889 0.88 6rux:A, 6rux:B, 6rux:C, 6s3t:B, 6s3t:S, 6s3t:T
4 8gl8:I 624 30 0.1944 0.0224 0.4667 1.5
5 4yo2:A 186 23 0.1389 0.0538 0.4348 3.0
6 2gb7:B 295 15 0.1111 0.0271 0.5333 4.2 2fqz:A, 2fqz:B, 2fqz:C, 2fqz:D, 2gb7:A, 2gb7:C, 2gb7:D
7 7pks:g 886 26 0.1389 0.0113 0.3846 4.3 8rbx:g, 8rbz:g
8 7ycx:G 910 26 0.1389 0.0110 0.3846 4.3
9 3hsr:B 133 40 0.1389 0.0752 0.2500 7.5 3hsr:A, 3hsr:C, 3hsr:D
10 7vw1:B 92 14 0.1111 0.0870 0.5714 7.8 7vw1:A, 7vw2:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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