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BioLiP
>protein
SLLARQCLAEFLGVFVLMLLTQGAVAQAVTSGETKGNFFTMFLAGSLAVTIAIYVGGNVSGAHLNPAFSLAMCIVGRLPW
VKLPIYILVQLLSAFCASGATYVLYHDALQNYTGGNLTVTGPKETASIFATYPAPYLSLNNGFLDQVLGTGMLIVGLLAI
LDRRNKGVPAGLEPVVVGMLILALGLSMGANCGIPLNPARDLGPRLFTYVAGWGPEVFSAGNGWWWVPVVAPLVGATVGT
ATYQLLVALHHP

The query sequence (length=252) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6f7h:C 253 251 0.9960 0.9921 1.0000 0.0 6f7h:A, 6f7h:B
2 8c9h:A 253 245 0.4286 0.4269 0.4408 1.26e-72 8c9h:B, 8c9h:C, 8c9h:D, 8c9h:E, 8c9h:F, 8c9h:G, 8c9h:H, 6n1g:A, 6n1g:C, 6n1g:B, 6n1g:D, 6qzi:A, 6qzj:A
3 1fx8:A 254 254 0.3770 0.3740 0.3740 3.50e-45
4 3c02:A 242 245 0.3452 0.3595 0.3551 3.60e-40
5 8jy6:A 242 241 0.3294 0.3430 0.3444 2.19e-37 8jy6:B, 8jy6:C, 8jy6:D, 8jy8:A, 8jy8:B, 8jy8:C, 8jy8:D
6 2evu:A 245 265 0.3175 0.3265 0.3019 3.48e-23 2f2b:A
7 8uy6:A 244 218 0.2302 0.2377 0.2661 2.62e-09 3nka:A, 2o9e:A, 8uy6:C, 8uy6:E, 8uy6:G, 8uy6:I, 8uy6:K, 8uy6:M, 8uy6:O
8 8ct2:D 247 256 0.2500 0.2551 0.2461 1.39e-08 8ct2:B, 8ct2:C, 8ct2:A, 8cte:O, 8cte:S, 8cte:R, 8cte:M, 7uze:D, 7uze:B, 7uze:C, 7uze:A
9 8sjx:A 220 212 0.2024 0.2318 0.2406 1.42e-07 8sjy:A
10 4nef:A 239 244 0.2381 0.2510 0.2459 1.70e-06
11 5dye:D 253 244 0.2381 0.2372 0.2459 2.51e-05 5c5x:A, 5c5x:B, 5c5x:C, 5c5x:D, 5c5x:E, 5c5x:H, 3d9s:C, 3d9s:D, 5dye:A, 5dye:B, 5dye:C
12 5bn2:A 260 251 0.2103 0.2038 0.2112 0.011
13 5x8f:B 485 68 0.0913 0.0474 0.3382 1.7 5buq:B, 5bur:A, 5bur:B, 5bus:A, 5bus:B, 5gtd:A, 5gtd:B, 5x8f:A, 5x8f:C, 5x8f:D, 5x8g:A, 5x8g:B, 5x8g:D, 5x8g:C
14 1txg:A 335 54 0.0794 0.0597 0.3704 2.3 1txg:B
15 5lqw:A 2130 118 0.1190 0.0141 0.2542 3.0
16 7abr:D 586 109 0.1190 0.0512 0.2752 4.9 7abr:A, 7abr:B, 7abr:C, 7abr:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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