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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SLKLGAIFLEGITVKGVTQVTTQPKLGEVQQKCHQFCGWEGSGFPGAQPVSMDKQNIRLLEQKPYKVSWKADGTRYMMLI
DGTNEVFMIDRDNSVFHVSNLEFPFRKDLRMHLSNTLLDGEMIIDKVNGQAVPRYLIYDIIKFNAQPVGDCDFNIRLQCI
EREIISPRHEKMKTGLIDKTQEPFSVRPKQFFDINISRKLLEGNMDGLIFQPIGKYKPGRCDDILKWKPPSLCNSISNPV
TKEMLFEFIDRCAA

The query sequence (length=254) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3rtx:A 262 264 0.9921 0.9618 0.9545 0.0 3rtx:B
2 8p4a:M 507 228 0.8228 0.4122 0.9167 4.25e-152 8p4b:M, 8w8e:a
3 8p4a:M 507 22 0.0787 0.0394 0.9091 2.83e-06 8p4b:M, 8w8e:a
4 4pz6:A 373 243 0.2677 0.1823 0.2798 1.13e-17 4pz6:B, 4pz8:A
5 1p16:A 390 222 0.2520 0.1641 0.2883 5.22e-17 1p16:B
6 1ckm:A 317 166 0.1614 0.1293 0.2470 1.42e-08 1ckm:B, 1ckn:A, 1cko:A
7 3gf0:A 199 49 0.0669 0.0854 0.3469 3.5 2hxd:A, 1pkj:B, 1pkk:B
8 1q33:A 292 62 0.0630 0.0548 0.2581 3.8 1qvj:A
9 7b1w:F 234 77 0.0827 0.0897 0.2727 6.5 7b1w:J, 7b1w:A, 7b1w:B, 7b1w:C, 7b1w:D, 7b1w:E, 7b1w:G, 7b1w:H, 7b1w:I, 7b1w:K, 7b1w:L
10 7a4l:A 54 23 0.0276 0.1296 0.3043 6.8 7a58:A, 6xyv:A
11 8wa1:B 998 36 0.0472 0.0120 0.3333 7.6
12 8wa0:B 973 36 0.0472 0.0123 0.3333 8.0 8w9z:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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