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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SLKGLRRLVLDVLKPHEPKTIVFALKLSELENVDGVNIHLSEIDQATENIKITILGNNLDYEQIKGVIEDMGGVIHSVDE
VVAGKIIVESVE

The query sequence (length=92) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3bpd:F 92 92 1.0000 1.0000 1.0000 2.55e-60 3bpd:A, 3bpd:H, 3bpd:B, 3bpd:I, 3bpd:C, 3bpd:J, 3bpd:D, 3bpd:K, 3bpd:E, 3bpd:L, 3bpd:M, 3bpd:G, 3bpd:N
2 2raq:B 94 89 0.6087 0.5957 0.6292 2.34e-32 2raq:A, 2raq:E, 2raq:F
3 6mo6:B 414 44 0.1848 0.0411 0.3864 0.56 8dhk:A, 8dhk:B, 6mo6:A, 6mo6:C, 6mo6:D, 6mp5:A, 6mp5:B, 6mp5:C, 6mp5:D, 6oi5:A, 6oi5:B, 6oi6:A, 6oi6:B, 6oib:A, 6oib:B, 6oic:A, 6oic:B, 6wh6:A, 6wh6:B
4 6nbr:A 316 54 0.1739 0.0506 0.2963 1.0 6nbr:B, 6nbr:C, 6nbr:D
5 2r72:A 765 21 0.1196 0.0144 0.5238 1.3
6 6zvp:D 458 30 0.1413 0.0284 0.4333 2.5 7a2g:A, 7a2g:B, 7a2g:C, 7a2g:D, 7pim:B, 7pim:A, 7pim:D, 7pim:F, 1toh:A, 2toh:A, 2xsn:A, 2xsn:B, 2xsn:C, 2xsn:D, 6zn2:A, 6zn2:C, 6zn2:E, 6zn2:G, 6zvp:A, 6zvp:B, 6zvp:C, 6zzu:B, 6zzu:A, 6zzu:C, 6zzu:D
7 4r1s:A 319 48 0.1630 0.0470 0.3125 2.7 4r1s:B
8 4a4a:A 886 25 0.1087 0.0113 0.4000 4.2 7mfk:A, 7mfl:A, 2vc9:A, 2vca:A, 2vcb:A, 2vcc:A
9 5mog:B 472 32 0.1304 0.0254 0.3750 5.1 5mog:A, 5mog:C, 5mog:D, 5mog:E
10 7cgu:A 352 21 0.1087 0.0284 0.4762 6.8
11 4aij:B 142 60 0.2065 0.1338 0.3167 7.1 4aij:A, 4aik:A
12 7waq:D 365 37 0.1304 0.0329 0.3243 9.5 7vb8:B, 7vb8:A, 7waq:B, 7waq:A, 7waq:C, 7war:B, 7war:A, 7was:A, 7was:B
13 6r5i:A 733 41 0.1522 0.0191 0.3415 9.8 6r5i:B, 6r5n:B, 6r5n:A, 6r5o:B, 6r5o:A, 6r5p:B, 6r5p:A, 6r5r:B, 6r5r:A, 6r5t:B, 6r5t:A, 6r5u:B, 6r5u:A, 6r5v:B, 6r5v:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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