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BioLiP
>protein
SLFAKLGGREAVEAAVDKFYNKIVADPTVSTYFSNTDMKVQRSKQFAFLAYALGGASEWKGKDMRTAHKDLVPHLSDVHF
QAVARHLSDTLTELGVPPEDITDAMAVVASTRTEVLNMPQQ

The query sequence (length=121) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1dly:A 121 121 1.0000 1.0000 1.0000 2.51e-88 1uvx:A
2 4xdi:A 127 114 0.4545 0.4331 0.4825 3.76e-34 6cii:A, 4xdi:B
3 2ksc:A 123 121 0.4711 0.4634 0.4711 8.96e-32 4l2m:A, 4l2m:B, 4max:A, 4max:B, 4max:C
4 2hz1:A 123 121 0.4463 0.4390 0.4463 5.84e-29 2hz2:A, 2hz3:A, 1mwb:A, 1rtx:A, 1s69:A, 1s6a:A
5 3aq5:A 117 116 0.4132 0.4274 0.4310 1.51e-27 3aq5:B, 3aq6:A, 3aq6:B, 3aq7:A, 3aq7:B, 3aq8:A, 3aq8:B, 3aq9:A, 3aq9:B
6 1s56:B 135 117 0.3884 0.3481 0.4017 7.25e-25 5ab8:A, 2gkm:A, 2gkm:B, 2gkn:A, 2gkn:B, 2gl3:A, 2gl3:B, 2gln:A, 2gln:B, 1idr:A, 1idr:B, 1rte:A, 1rte:B, 1s56:A, 1s61:A, 1s61:B
7 1dlw:A 116 118 0.3719 0.3879 0.3814 9.53e-24 1uvy:A
8 6bme:A 127 114 0.3967 0.3780 0.4211 5.31e-20 6bme:B
9 6td7:A 126 99 0.2479 0.2381 0.3030 1.28e-10
10 8tls:A 116 116 0.2066 0.2155 0.2155 1.84e-06 8tls:B, 7tt9:A, 7tt9:B, 7tt9:C, 7tt9:D, 8ugz:A, 8ugz:B, 8ugz:C, 8ugz:D, 8uzu:A, 8uzu:B, 8uzu:C, 8uzu:D, 8vij:A, 8vij:B, 8vij:C, 8vij:D, 8vsh:A, 8vsh:B, 8vsh:C, 8vsh:D, 8w3a:A, 8w3a:B, 8w3a:C, 8w3a:D
11 5d1v:A 121 103 0.2479 0.2479 0.2913 5.56e-05 5d1v:B
12 5v3u:A 131 94 0.2149 0.1985 0.2766 1.72e-04 5v3t:A, 5v3t:B, 5v3u:B, 5v3v:A, 5v3v:B
13 2bkm:A 128 55 0.1570 0.1484 0.3455 3.65e-04 2bkm:B
14 1ux8:A 118 48 0.1322 0.1356 0.3333 0.066
15 4uzv:A 129 73 0.1488 0.1395 0.2466 0.15 2bmm:A
16 1ngk:B 127 64 0.1322 0.1260 0.2500 0.79 1ngk:A, 1ngk:C, 1ngk:D, 1ngk:E, 1ngk:F, 1ngk:G, 1ngk:H, 1ngk:I, 1ngk:J, 1ngk:K, 1ngk:L, 2qrw:A, 2qrw:B, 2qrw:C, 2qrw:D, 2qrw:E, 2qrw:F, 2qrw:G, 2qrw:H, 2qrw:I, 2qrw:J, 2qrw:K, 2qrw:L
17 4uur:A 124 52 0.1240 0.1210 0.2885 1.1 4uur:B
18 5w7m:A 273 51 0.1240 0.0549 0.2941 4.6
19 2dgn:A 431 24 0.0909 0.0255 0.4583 4.8 1iwe:A, 1iwe:B, 1lny:A, 1lny:B, 1lon:A, 1loo:A, 1mez:A, 1mf0:A, 1mf1:A
20 2zfb:A 141 83 0.1983 0.1702 0.2892 6.1
21 7u0l:B 147 87 0.1736 0.1429 0.2414 7.0
22 7p24:AAA 494 28 0.1157 0.0283 0.5000 7.0
23 4rz3:A 244 28 0.1074 0.0533 0.4643 9.8 4rz3:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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