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BioLiP
>protein
SLAQIKSLFATRLYHAPLSEHGPALDPAEFAASCYSIAEDDDAGQEWCEREGYPGYTSYASLTDLPWRFPIFADLVKSLD
AHVAAFAEDLEFELDGKALRLEDIWINILPEGGVHGSHIHPHSVISGTTYVAMPEGTSALKLEDPRLPFMMAAPTRRKGA
REELRTFRSVAPKVGDVLLWESWLRHEVPMNMAEEDRISVSFNYAW

The query sequence (length=206) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2rg4:A 206 206 1.0000 1.0000 1.0000 8.29e-154 2rg4:B
2 3bvc:A 203 200 0.8010 0.8128 0.8250 2.43e-123
3 3ggg:D 293 70 0.1019 0.0717 0.3000 0.24 2g5c:A, 2g5c:B, 2g5c:C, 2g5c:D, 3ggg:A, 3ggg:B, 3ggg:C, 3ggo:A, 3ggo:B, 3ggo:D, 3ggo:C, 3ggp:A, 3ggp:B, 3ggp:D, 3ggp:C
4 4csw:A 388 59 0.0971 0.0515 0.3390 0.39 4csw:B, 4cug:A, 4cug:B
5 8csp:W 98 33 0.0631 0.1327 0.3939 1.7 8csq:W
6 4xcb:A 260 40 0.0680 0.0538 0.3500 1.7 4xca:A, 4xca:B, 4xca:C, 4xca:D, 4xcb:B, 4xcb:C, 4xcb:D, 4zpi:A, 4zpi:B, 4zpi:C, 4zpi:D
7 3a79:B 525 29 0.0680 0.0267 0.4828 3.4
8 6tzz:A 277 42 0.0485 0.0361 0.2381 8.3 6tzy:A, 6tzy:B, 6tzy:C, 6tzy:D, 6tzz:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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