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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SKWIDRRSTRVPHNGKDIWYFGDQPSCALCHIRFRYKQDYEAHKESELHVNRLRWVETMNWWRETGEPAYLKASNEQWEW
FEQHVLPTKAQEMGCTLDEARRVYRQAIMTETPTWHRPLQCPTVKQEVQEPRDQRWPASPKW

The query sequence (length=142) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7aih:Ay 142 142 1.0000 1.0000 1.0000 1.15e-105 7ane:Ay
2 6hiv:BY 102 102 0.4225 0.5882 0.5882 3.53e-39 6hix:BY
3 6h5q:B 381 45 0.1056 0.0394 0.3333 0.22 6h5s:C, 4uft:B
4 7zm7:P 122 48 0.1197 0.1393 0.3542 0.43 7zmb:P, 7zmg:P
5 7ob9:A 1535 89 0.1831 0.0169 0.2921 0.46 7oba:A
6 2yrk:A 55 43 0.0775 0.2000 0.2558 0.67
7 4id9:B 328 35 0.0845 0.0366 0.3429 0.92 4id9:A, 4idg:A, 4idg:B
8 7caf:E 443 60 0.1268 0.0406 0.3000 1.4 8hpl:E, 8hpm:E, 8hpn:E, 8hpr:E
9 7obb:A 1510 85 0.1690 0.0159 0.2824 1.8
10 7oi3:E 394 45 0.0915 0.0330 0.2889 2.0
11 1fu9:A 36 19 0.0634 0.2500 0.4737 2.1 1jn7:A
12 1o98:A 509 24 0.0634 0.0177 0.3750 3.2 1ejj:A, 1eqj:A, 1o99:A
13 7vbc:A 1477 85 0.1620 0.0156 0.2706 3.6 7vba:A, 7vbb:A
14 4dg9:A 575 20 0.0634 0.0157 0.4500 5.3 4dg8:A
15 4pwa:D 87 40 0.0915 0.1494 0.3250 8.4 4pw9:B, 4pwa:A, 4pwa:B, 4pwa:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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