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BioLiP
>protein
SKLVLTGERHYTRNDDIRQSILALGQDVNIIQTQIEQRLPWIKQVSVRKQWPDELKIHLVEYVPIARWNDQHMVDAEGNT
FSVPPERTSKQVLPMLYGPEGSANEVLQGYREMGQMLAKDRFTLKEAAMTARRSWQLTLNNDIKLNLGRGDTMKRLARFV
ELYPVLQQQAQTDGKRISYVDLRYDSGAAVGWAPLP

The query sequence (length=196) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5z2w:A 209 203 1.0000 0.9378 0.9655 2.41e-143 6h9n:A, 6h9o:A, 6h9o:C
2 4v6m:AZ 98 46 0.1990 0.3980 0.8478 7.45e-17
3 1f0x:A 502 85 0.1224 0.0478 0.2824 4.8 1f0x:B
4 8bpl:A 316 162 0.2143 0.1329 0.2593 5.2
5 7ohg:A 351 27 0.0561 0.0313 0.4074 5.6 6s2t:A, 6s2u:A, 6s2v:A
6 4ekn:B 304 41 0.0612 0.0395 0.2927 8.9
7 3h0l:A 478 114 0.1071 0.0439 0.1842 9.2 3h0l:D, 3h0l:G, 3h0l:J, 3h0l:M, 3h0l:P, 3h0l:S, 3h0l:V, 3h0m:A, 3h0m:D, 3h0m:G, 3h0m:J, 3h0m:M, 3h0m:P, 3h0m:S, 3h0m:V, 3h0r:A, 3h0r:D, 3h0r:G, 3h0r:J, 3h0r:M, 3h0r:P, 3h0r:S, 3h0r:V

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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