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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVFIIAV
PTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVIENLGFTIGEDIYLVHCPERVLPGKILE
ELVHNNRIIGGVTKACIEAGKRVYRTFVQGEMIETDARTAEMSKLMENTYRDVNIALANELTKICNNLNINVLDVIEMAN
KHPRVNIHQPGPGVGGHCLAVDPYFNAKLIQTGREINNSMPAYVVDTTKQIIKALSGNKVTVFGLTYKGDVDDIRESPAF
DIYELLNQEPDIEVCAYDPHVELDFVEHDMSHAVKDASLVLILSDHSEFKNLSDSHFDKMKHKVIFDTKNVVKSSFEDVL
YYNYGNIFNFID

The query sequence (length=412) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3ojl:A 418 418 0.9976 0.9833 0.9833 0.0 3ojl:B, 3ojo:A, 3ojo:B
2 4r16:A 418 409 0.4417 0.4354 0.4450 7.72e-108 4r16:B
3 4xr9:A 456 423 0.2913 0.2632 0.2837 8.38e-55
4 2y0c:A 461 438 0.3058 0.2733 0.2877 4.48e-40 2y0c:B, 2y0c:C, 2y0c:D, 2y0d:A, 2y0d:B, 2y0d:C, 2y0d:D, 2y0e:A, 2y0e:B, 2y0e:C, 2y0e:D
5 3vtf:A 432 366 0.2621 0.2500 0.2951 2.88e-34
6 4a7p:A 429 421 0.2694 0.2587 0.2637 1.28e-33 4a7p:B
7 3gg2:A 431 426 0.2743 0.2622 0.2653 8.43e-32 3gg2:D, 3gg2:B, 3gg2:C
8 1mfz:A 436 403 0.2451 0.2317 0.2506 8.49e-25 1mfz:B, 1mfz:C, 1mfz:D, 1muu:C, 1muu:A, 1muu:B, 1muu:D, 1mv8:B, 1mv8:A, 1mv8:C, 1mv8:D
9 6om8:D 468 446 0.2646 0.2329 0.2444 2.56e-22 6om8:A, 6om8:B, 6om8:C, 6om8:E, 6om8:F, 6om8:G, 6om8:H, 6om8:I, 6om8:J, 6om8:K, 6om8:L
10 7kws:A 390 361 0.2160 0.2282 0.2465 5.00e-20 7kws:B
11 3pjg:A 389 378 0.2524 0.2674 0.2751 6.62e-19 3pln:A, 3plr:A
12 3khu:B 467 451 0.2403 0.2120 0.2195 1.56e-16 6c4j:A, 6c4j:B, 6c4j:C, 6c4j:D, 6c4j:E, 6c4j:F, 6c4j:G, 6c4j:H, 6c4j:I, 6c4j:J, 6c4j:K, 6c4j:L, 6c58:A, 6c58:B, 6c58:C, 6c58:D, 6c58:E, 6c58:F, 6c5a:A, 6c5a:B, 6c5a:C, 6c5a:D, 6c5a:E, 6c5a:F, 6c5z:A, 6c5z:B, 6c5z:C, 6c5z:D, 6c5z:E, 6c5z:F, 3khu:A, 3khu:C, 3khu:D, 3khu:E, 3khu:F, 3prj:A, 3prj:B, 3prj:C, 3prj:D, 3prj:E, 3prj:F, 3ptz:A, 3ptz:B, 3ptz:C, 3ptz:D, 3ptz:E, 3ptz:F, 2q3e:A, 2q3e:B, 2q3e:C, 2q3e:D, 2q3e:E, 2q3e:F, 2q3e:G, 2q3e:H, 2q3e:I, 2q3e:J, 2q3e:K, 2q3e:L, 2qg4:A, 2qg4:B, 2qg4:C, 2qg4:D, 2qg4:E, 2qg4:F, 2qg4:G, 2qg4:H, 3tdk:A, 3tdk:B, 3tdk:G, 3tdk:H, 3tdk:L, 3tdk:K, 3tdk:F, 3tdk:E, 3tdk:D, 3tdk:C, 3tdk:J, 3tdk:I, 5tjh:A, 5tjh:B, 5tjh:C, 5tjh:D, 5tjh:E, 5tjh:F, 5vr8:A, 5vr8:B, 5vr8:C, 5vr8:D, 5vr8:E, 5vr8:F
13 4edf:A 431 433 0.2282 0.2181 0.2171 3.54e-16 4edf:B, 4edf:C, 4edf:D
14 1dli:A 402 371 0.2379 0.2438 0.2642 1.24e-11 1dlj:A
15 5je8:B 294 209 0.1238 0.1735 0.2440 0.014 5je8:A, 5je8:C, 5je8:D
16 2i9p:B 296 271 0.1505 0.2095 0.2288 0.17 2i9p:A, 2i9p:C, 2i9p:D
17 6cmz:A 462 35 0.0388 0.0346 0.4571 0.52 6cmz:B, 6cmz:C, 6cmz:D
18 9arh:A 802 42 0.0340 0.0175 0.3333 0.53 9are:A, 9are:C, 9arf:A, 9arf:C, 9arh:C, 9bib:A, 9bib:C, 7eot:B, 7eot:D, 7eou:B, 7eou:D, 7eu7:A, 7eu7:C, 7saa:A, 7saa:C, 7sac:A, 7sac:C, 5uow:C, 6whu:A, 6whu:C, 6whv:C, 6why:A, 6why:C, 6wi0:A, 6wi0:C, 7yff:A, 7yff:C, 7yfi:A, 7yfi:C
19 7yfl:A 708 42 0.0364 0.0212 0.3571 0.67 7yfl:C
20 7yfr:A 691 41 0.0316 0.0188 0.3171 0.83 7yfr:C
21 3myr:D 561 52 0.0364 0.0267 0.2885 1.1 3myr:B, 3myr:F, 3myr:H
22 7ktr:A 3042 49 0.0413 0.0056 0.3469 1.1
23 2o2h:A 294 102 0.0680 0.0952 0.2745 1.1 2o2i:A
24 5vgr:A 408 59 0.0485 0.0490 0.3390 1.3 5vgr:B, 6xjo:A, 6xjo:B
25 4yed:D 255 107 0.0655 0.1059 0.2523 1.8 4d79:A, 4d79:B, 4d79:C, 4d79:D, 4d7a:A, 4d7a:B, 4d7a:D, 4rdh:A, 4rdh:B, 4rdh:C, 4rdh:D, 4rdi:A, 4rdi:B, 4rdi:C, 4rdi:D, 4yed:A, 4yed:B, 4yed:C
26 8xvg:L 3485 49 0.0413 0.0049 0.3469 2.1 8xvv:L
27 2bc0:A 473 92 0.0607 0.0529 0.2717 3.5 2bc0:B, 2bc1:A, 2bc1:B, 2bcp:A, 2bcp:B
28 1w0m:A 225 69 0.0510 0.0933 0.3043 3.5 1w0m:B, 1w0m:C, 1w0m:D, 1w0m:E, 1w0m:F, 1w0m:G, 1w0m:H
29 6msb:c 287 134 0.0825 0.1185 0.2537 3.6 8cvt:c, 6msd:c, 6mse:c, 6msg:c, 6msh:c, 6msj:c, 6msk:c, 7qxn:c, 7qxp:c, 7qxu:c, 7qxw:c, 7qxx:c, 7qy7:c, 7qya:c, 7qyb:c, 5t0c:Ac, 5t0c:Bc, 5t0g:c, 5vfp:c, 5vfq:c, 5vfr:c, 5vfs:c, 7w37:c, 7w38:c, 7w39:c, 7w3a:c, 7w3b:c, 7w3c:c, 7w3f:c, 7w3g:c, 7w3h:c, 7w3i:c, 7w3j:c, 7w3k:c, 7w3m:c, 6wjd:c, 6wjn:c
30 2anu:A 224 135 0.0752 0.1384 0.2296 3.8 2anu:B, 2anu:C, 2anu:D, 2anu:E, 2anu:F
31 7jil:4 36 22 0.0267 0.3056 0.5000 4.1
32 3zwa:A 727 37 0.0316 0.0179 0.3514 5.4 5mgb:A, 5mgb:B, 5omo:A, 5omo:B, 2x58:A, 2x58:B, 6z5f:AAA, 6z5f:BBB, 6z5o:AAA, 6z5v:AAA, 6z5v:BBB, 6zib:AAA, 6zib:BBB, 6zic:AAA, 6zic:BBB, 3zw9:A, 3zw9:B, 3zwa:B, 3zwb:A, 3zwb:B, 3zwc:A, 3zwc:B
33 1wdq:A 493 69 0.0485 0.0406 0.2899 5.6 1bfn:A, 1btc:A, 1byb:A, 1byc:A, 1byd:A, 1q6c:A, 1q6d:A, 1q6e:A, 1q6f:A, 1q6g:A, 1v3h:A, 1v3i:A, 1wdr:A, 1wds:A
34 4dyd:A 283 57 0.0437 0.0636 0.3158 5.7 4e13:A
35 3f3s:A 312 78 0.0583 0.0769 0.3077 6.0 3f3s:B
36 4zfc:B 320 56 0.0388 0.0500 0.2857 6.3 6a7b:A, 6a7b:B, 8bbs:B, 8bbs:A, 7c7f:A, 7c7f:B, 7c7g:A, 7c7g:B, 7c7h:A, 7c7h:B, 4dbs:A, 4dbs:B, 4dbu:A, 4dbu:B, 4dbw:A, 4dbw:B, 4dz5:A, 6f2u:A, 6f2u:B, 2f38:A, 6f78:A, 6f78:B, 4fa3:A, 4fal:A, 4fam:A, 4fam:B, 9ffd:A, 9ffd:B, 2fgb:A, 6gxk:A, 6gxk:B, 4h7c:A, 4hmn:A, 5hnt:A, 5hnt:C, 5hnu:A, 5hnu:C, 8i0c:A, 8i0c:B, 8jp1:A, 8jp1:B, 3r43:A, 3r58:A, 3r6i:A, 3r7m:A, 3r8g:A, 3r8h:A, 3r94:A, 8rb6:A, 8rb6:B, 1ry0:A, 1ry0:B, 1ry8:A, 1ry8:B, 1s1p:A, 1s1r:A, 1s2a:A, 1s2c:A, 3ufy:A, 3ug8:A, 3ugr:A, 3uwe:A, 4wdt:A, 4wdu:A, 4wdw:A, 4wdw:B, 4wdx:A, 4wdx:B, 7wqm:A, 7wqm:B, 7wqr:A, 7wqr:B, 7wqs:A, 7wqs:B, 4wrh:A, 7x3l:A, 7x3l:B, 7x3m:A, 7x3m:B, 7x3o:A, 7x3o:B, 1xf0:A, 4xvd:A, 4xvd:B, 4xve:A, 4yvv:A, 4yvv:B, 4yvx:A, 4yvx:B, 4zfc:A, 1zq5:A
37 1yhu:B 144 125 0.0777 0.2222 0.2560 7.3 1yhu:F, 1yhu:J, 1yhu:N, 1yhu:R, 1yhu:V
38 7zp9:B 133 37 0.0316 0.0977 0.3514 8.3 7zp9:H, 7zp9:D, 7zp9:E, 7zp9:F, 7zp9:A, 7zp9:J, 7zp9:L, 7zpo:H, 7zpo:D, 7zpo:E, 7zpo:F, 7zpo:A, 7zpo:B, 7zpo:J, 7zpo:L, 7zpr:H, 7zpr:D, 7zpr:E, 7zpr:F, 7zpr:A, 7zpr:B, 7zpr:J, 7zpr:L
39 1dxl:A 467 56 0.0388 0.0343 0.2857 8.4 1dxl:B, 1dxl:C, 1dxl:D
40 2x06:A 344 37 0.0316 0.0378 0.3514 8.8 2x06:B, 2x06:C, 2x06:D, 2x06:E, 2x06:F, 2x06:G, 2x06:H
41 1zem:A 260 44 0.0316 0.0500 0.2955 9.0 1zem:B, 1zem:C, 1zem:D, 1zem:E, 1zem:F, 1zem:G, 1zem:H
42 8ajm:B 395 60 0.0388 0.0405 0.2667 9.7 8t9a:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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