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BioLiP
>protein
SKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLRHP

The query sequence (length=53) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7rdq:F 349 52 0.9057 0.1375 0.9231 5.23e-27 2a68:F, 2a68:P, 2a69:F, 2a69:P, 6cuu:F, 5d4c:F, 5d4c:P, 5d4d:F, 5d4d:P, 5d4e:F, 5d4e:P, 5e17:F, 5e18:F, 7eh0:F, 7eh1:F, 7eh2:F, 7eh2:P, 4g7h:F, 4g7h:P, 4g7o:F, 4g7o:P, 4g7z:F, 4g7z:P, 5i2d:F, 5i2d:Q, 1iw7:F, 1iw7:P, 4ki2:A, 4ki2:B, 6kqd:F, 6kqd:P, 6kqe:F, 6kqf:F, 6kqg:F, 6kqh:F, 6kql:F, 6kqm:F, 6kqn:F, 1ku7:A, 6l74:F, 6lts:F, 7mlb:F, 7mli:F, 7mlj:F, 3n97:A, 4oin:F, 4oio:F, 4oip:F, 4oiq:F, 4oir:F, 6ovr:F, 6ovy:F, 6ow3:F, 6oy5:F, 6oy6:F, 6oy7:F, 6p70:F, 6p71:F, 4q4z:F, 4q5s:F, 1rio:H, 1smy:F, 5tjg:F, 3ugo:A, 3ugp:A, 5vo8:F, 5voi:F, 8w8n:F, 8w8o:F, 8w8p:F, 6wox:F, 6woy:F, 5x21:F, 5x22:F, 5x22:P, 4xln:F, 4xln:L, 4xlp:F, 4xlp:L, 4xlq:F, 4xlq:L, 4xlr:F, 4xlr:L, 4xls:F, 4xls:L
2 7ckq:F 272 51 0.7170 0.1397 0.7451 1.64e-18 7f75:F, 8x6f:E
3 7ckq:F 272 23 0.1887 0.0368 0.4348 9.4 7f75:F, 8x6f:E
4 8cwr:B 109 51 0.6226 0.3028 0.6471 2.15e-18 8cwt:B, 8cwt:D, 8cwt:F, 8cyf:B, 7kuf:B
5 7l7b:F 272 51 0.7170 0.1397 0.7451 2.13e-17
6 8k60:F 315 51 0.6415 0.1079 0.6667 3.18e-17 8dy7:F, 8dy9:F, 8hvr:F, 8jke:F, 7vpd:F, 7vpz:F, 7x74:F, 7x75:F, 7x76:F
7 8gzg:F 314 51 0.6981 0.1178 0.7255 4.16e-17 8gzh:F
8 8h3v:G 314 51 0.6981 0.1178 0.7255 4.70e-17 8h40:G
9 6bzo:F 326 51 0.6226 0.1012 0.6471 7.38e-17 6c04:F, 6cce:F, 6ccv:F, 6dcf:F, 6edt:F, 6ee8:F, 6eec:F, 6fbv:F, 8hih:F, 7kif:F, 7kim:F, 7kin:F, 6m7j:F, 6ono:B, 6ono:D, 6onu:B, 6onu:D, 6onu:F, 6onu:H, 7p5x:AF, 5tw1:F, 7u22:F, 5uh5:F, 5uh6:F, 5uh8:F, 5uh9:F, 5uha:F, 5uhb:F, 5uhc:F, 5uhd:F, 5uhe:F, 5uhf:F, 5uhg:F, 5vi5:F, 5vi8:F, 6vvs:F, 6vvt:F, 6vvv:F, 6vvx:F, 6vvy:F, 6vvz:F, 6vw0:F
10 3iyd:F 479 51 0.6792 0.0752 0.7059 1.66e-16
11 6wmr:Z 470 51 0.6792 0.0766 0.7059 2.23e-16 6wmt:Z
12 6n60:F 318 51 0.6604 0.1101 0.6863 8.16e-16 8igr:L, 8igs:L
13 6psr:L 548 51 0.6604 0.0639 0.6863 8.56e-16 6n58:L, 6n61:F
14 6n4c:F 558 51 0.6604 0.0627 0.6863 9.35e-16 8ad1:F, 6b6h:F, 7bef:F, 7beg:F, 7c17:F, 7c97:F, 6ca0:F, 7chw:F, 7dy6:F, 8ftd:L, 6jnx:F, 8jo2:F, 6k4y:F, 7khb:F, 7khc:F, 7khe:F, 7khi:F, 6ldi:F, 7mkd:L, 7mke:L, 7mki:L, 7mkj:L, 7n4e:F, 6n57:L, 6n62:F, 6oul:L, 6p18:F, 2p7v:B, 6pb4:F, 6pb5:F, 6pb6:F, 6psq:L, 6pss:L, 6pst:L, 6psu:L, 6psv:L, 6psw:L, 7szj:F, 8to1:L, 8to6:L, 8to8:L, 8toe:L, 8tom:L, 5vt0:L, 7vwy:F, 7vwz:F, 7w5w:F, 7w5x:F, 7w5y:F, 6wmu:F, 6xh7:F, 6xh8:F, 6xl5:F, 6xl9:F, 6xlj:F, 6xll:F, 8y6u:F, 4yln:F, 4yln:L, 4yln:R, 4ylo:F, 4ylo:L, 4ylo:R, 4ylp:F, 4ylp:L, 4ylp:R
15 4kn7:X 517 51 0.6604 0.0677 0.6863 9.71e-16
16 8u3b:F 431 51 0.6604 0.0812 0.6863 1.17e-15
17 7ye1:F 497 53 0.6415 0.0684 0.6415 4.28e-15 7ye2:F, 5yix:A
18 7ubm:F 353 48 0.6038 0.0907 0.6667 7.58e-13 7ubn:F
19 6ido:A 86 51 0.4340 0.2674 0.4510 1.17e-06 6ido:B
20 7f0r:F 278 51 0.4340 0.0827 0.4510 1.97e-06
21 6omf:F 278 51 0.4340 0.0827 0.4510 4.21e-06 5ipl:F, 5ipm:F, 5ipn:F, 6kj6:F, 6utv:FFF, 6utw:FFF, 6utx:FFF, 6uty:FFF, 6utz:FFF, 6uu0:FFF, 6uu1:FFF, 6uu2:FFF, 6uu3:FFF, 6uu4:FFF, 6uu5:FFF, 6uu6:FFF, 6uu7:FFF, 6uu8:FFF, 6uu9:FFF, 6uua:FFF, 6uub:FFF, 6uuc:FFF
22 8hkc:E 262 49 0.3585 0.0725 0.3878 1.40e-04
23 6pfv:G 223 53 0.3774 0.0897 0.3774 0.022 6pfj:A, 6pfv:A, 6pfv:D
24 6pmi:F 239 49 0.3396 0.0753 0.3673 0.12 6pmj:F
25 7lq4:A 192 52 0.3962 0.1094 0.4038 0.34
26 1v29:A 203 33 0.2453 0.0640 0.3939 1.7 2dpp:A, 3hht:A, 7qom:A, 7qop:A, 7qou:A, 7qov:A, 7qoy:A, 7z0v:A
27 5vg3:A 382 30 0.2642 0.0366 0.4667 5.6 5hi0:A, 1j58:A, 1l3j:A, 4met:A, 4met:B, 4met:C, 4met:D, 3s0m:A, 6tzp:A, 6ufi:A, 1uw8:A, 2uy8:A, 2uy9:A, 2uya:A, 2uyb:A, 2v09:A, 5vg3:B, 5vg3:C
28 6zr5:B 359 24 0.2264 0.0334 0.5000 7.6 4awi:A, 8bzp:A, 3cgf:A, 3elj:A, 6emh:A, 6emh:B, 6eq9:A, 6f5e:B, 2g01:A, 2g01:B, 3g90:X, 3g9l:X, 3g9n:A, 2gmx:A, 2gmx:B, 4h36:A, 4h39:A, 4h3b:A, 4h3b:C, 2h96:A, 2h96:B, 1jnk:A, 4kke:A, 4kkh:A, 7ksi:A, 7ksj:A, 4l7f:A, 5lw1:B, 5lw1:E, 5lw1:H, 2no3:A, 2no3:B, 3o17:A, 3o17:B, 3o2m:A, 3o2m:B, 7ore:A, 7orf:A, 1pmn:A, 1pmu:A, 1pmv:A, 3ptg:A, 8pt8:A, 8pt8:B, 8pt8:C, 8pt9:A, 8pt9:B, 8pt9:C, 8pta:A, 8pta:B, 8pta:C, 3pze:A, 4qtd:A, 7s1n:A, 3tti:A, 1uki:A, 4ux9:A, 4ux9:B, 4ux9:C, 4ux9:D, 3v3v:A, 3v6r:A, 3v6r:B, 3v6s:A, 3v6s:B, 3vud:A, 3vug:A, 3vuh:A, 3vui:A, 3vuk:A, 3vul:A, 3vum:A, 4w4v:A, 4w4w:A, 4w4x:A, 4w4y:A, 2waj:A, 8wgf:A, 4whz:A, 4x21:A, 4x21:B, 8x5m:A, 2xrw:A, 2xs0:A, 4y46:A, 4y5h:A, 7yl1:A, 2zdt:A, 6zr5:A
29 7u5d:A 630 35 0.2453 0.0206 0.3714 7.7
30 5g4i:A 423 14 0.1887 0.0236 0.7143 9.0 5g4i:B, 5g4j:A, 5g4j:B
31 4w8x:A 329 19 0.1321 0.0213 0.3684 9.3
32 3j9w:BJ 123 20 0.1698 0.0732 0.4500 9.6 7as8:L, 7as9:L, 5njt:b, 7o5b:p, 7ope:L, 7qgu:H, 7qh4:H, 6tnn:b, 6tpq:b

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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