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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SKLIFVSMITRNGDRAPFANIENANYSWGTELSELTPIGMNQEYNLGLQLRKRYIDKFGLLPEHYVDQSIYVLSSHTNRT
VVSAQSLLMGLYPAGTGPLIGDGDPAIKDRFQPIPIMTLSADSRLIQFPYEQYLAVLKKYVYNSPEWQNKTKEAAPNFAK
WQQILGNRISGLNDVITVGDVLIVAQAHGKPLPKGLSQEDADQIIALTDWGLAQQFKSQKVSYIMGGKLTNRMIEDLNNA
VNGKSKYKMTYYSGHALTLLEVMGTLGVPLDTAPGYASNLEMELYKDGDIYTVKLRYNGKYVKLPIMDKNNSCSLDALNK
YMQSINEKF

The query sequence (length=329) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3it3:A 337 329 0.9970 0.9733 0.9970 0.0 4e3w:A, 4e3w:B, 3it0:A, 3it0:B, 3it3:B
2 7d2f:A 328 321 0.3951 0.3963 0.4050 1.41e-77 7d2f:B
3 1nd6:B 343 333 0.2766 0.2653 0.2733 6.62e-21 1cvi:A, 1cvi:B, 1cvi:C, 1cvi:D, 2hpa:A, 2hpa:B, 2hpa:D, 1nd5:A, 1nd5:B, 1nd5:C, 1nd5:D, 1nd6:A, 1nd6:C, 1nd6:D
4 1rpt:A 342 344 0.2766 0.2661 0.2645 6.80e-21
5 4aro:A 401 95 0.0790 0.0648 0.2737 0.025
6 4arv:A 409 96 0.0851 0.0685 0.2917 0.042 4arv:B
7 1nt4:A 391 151 0.1216 0.1023 0.2649 0.053 1nt4:B, 6rmr:A
8 1sk8:A 435 101 0.0729 0.0552 0.2376 0.53 1sk9:A
9 3ntl:A 388 124 0.0973 0.0825 0.2581 0.70 3ntl:B
10 7w7h:A 541 57 0.0578 0.0351 0.3333 1.2 7w7h:B
11 4n5f:A 378 48 0.0486 0.0423 0.3333 2.9 4n5f:B
12 3k4q:A 438 117 0.0729 0.0548 0.2051 4.4 3k4q:B
13 4fdt:A 398 96 0.0699 0.0578 0.2396 4.7 4fdt:B, 4fdu:A, 4fdu:B
14 8wrk:A 434 124 0.1064 0.0806 0.2823 7.6 8in7:A, 8ina:A, 8ind:A, 8inj:A, 8ino:A, 8inv:A, 8wrj:A
15 8tl1:A 336 46 0.0517 0.0506 0.3696 7.7 8tl8:A, 8tl8:B
16 3b55:A 408 137 0.0821 0.0662 0.1971 8.6
17 2wss:V 66 27 0.0334 0.1667 0.4074 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218