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BioLiP
>protein
SKGTRFERDLLVELWKAGFAAIRVAGSGVSPFPCPDIVAGNGRTYLAIEVKMRKELPLYLSADEVEQLVTFARGFGAEAY
VALKLPRKKWRFFPVQMLERTEKNFKIDESVYPLGLEIAEVAGKF

The query sequence (length=125) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2wiw:B 126 123 0.9840 0.9762 1.0000 4.67e-87 2wiz:A, 2wj0:B, 2wj0:A
2 3pzr:A 370 61 0.1600 0.0541 0.3279 0.21 1mb4:A, 1mb4:B, 3pzr:B, 3q0e:A, 3q0e:B, 4r5m:A, 4r5m:B
3 1qha:A 903 78 0.1920 0.0266 0.3077 0.35 1bg3:A, 1bg3:B, 1cza:N, 1dgk:N, 4f9o:A, 4f9o:B, 4foe:A, 4foe:B, 4foi:A, 4foi:B, 4fpa:A, 4fpa:B, 4fpb:A, 4fpb:B, 1hkb:A, 1hkb:B, 1hkc:A, 1qha:B
4 5xyi:E 246 65 0.1440 0.0732 0.2769 0.59
5 7os0:A 1130 41 0.1280 0.0142 0.3902 0.89 7os0:C
6 7ui7:A 613 46 0.1200 0.0245 0.3261 3.2 7ui6:A, 7ui6:B
7 7zvj:B 587 46 0.1200 0.0256 0.3261 3.4 7zvj:A
8 2w3j:A 137 19 0.0720 0.0657 0.4737 3.5
9 4efz:A 295 45 0.1040 0.0441 0.2889 4.7 4efz:B
10 4mob:A 319 48 0.1200 0.0470 0.3125 5.3
11 3hpa:A 428 85 0.2080 0.0607 0.3059 5.3 3hpa:B
12 4moc:A 273 48 0.1200 0.0549 0.3125 5.8 3b7k:A, 3b7k:B, 3b7k:C
13 5a01:A 681 44 0.1280 0.0235 0.3636 7.2 5a01:B, 5a01:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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