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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SKDTDKDGIPDNKDACPEVPGLKEFNGCPDTDGDGIPDKDDACPQVKGPKEFNGCPDTDGDGIPDKDDACPEVAGPKEFN
GCPDTDGDGIPDKDDKCPDVAGPAENGGCPWPDTDGDGVLDKDDLCPEVAGPASNKGCPEPDEKEQKQLNQYAKTILFDT
GKATIKFQSAEVLNQIINVLKKYPNSRFRIEGHTDSTGKKAKNMILSQNRADAVKVYLIQGGIDAGRLESQGFGPEKPIA
SNKNKKGRELNRRVEINLIK

The query sequence (length=260) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5wtl:C 260 260 1.0000 1.0000 1.0000 0.0 5wtl:A, 5wtl:B, 5wtl:D
2 4g88:D 123 100 0.1808 0.3821 0.4700 2.92e-22 4g4y:A, 4g4y:B, 4g4y:C, 4g4y:D, 4g4y:E, 4g4y:F, 4g4y:G, 4g4y:H, 4g4z:A, 4g4z:B, 4g4z:C, 4g4z:D, 4g4z:E, 4g4z:F, 4g4z:G, 4g4z:H, 4g88:A, 4g88:B, 4g88:C, 4g88:E, 4g88:F, 4g88:G, 4g88:H, 3td3:A, 3td3:B, 3td3:C, 3td3:D, 3td3:E, 3td3:F, 3td3:G, 3td3:H, 3td4:A, 3td4:B, 3td4:C, 3td4:D, 3td4:E, 3td4:F, 3td4:G, 3td4:H, 3td5:A, 3td5:B, 3td5:C, 3td5:D, 3td5:E, 3td5:F, 3td5:G, 3td5:H
3 5u1h:C 123 101 0.1500 0.3171 0.3861 8.62e-19 5u1h:A, 5u1h:B, 5u1h:D
4 7rjj:A 120 104 0.1577 0.3417 0.3942 8.03e-17 7rjj:B
5 4g4v:A 111 104 0.1308 0.3063 0.3269 2.59e-13 4g4w:A, 4g4x:A
6 2aiz:P 134 108 0.1423 0.2761 0.3426 1.11e-12
7 7muc:BL 173 87 0.1192 0.1792 0.3563 5.93e-12 7muc:CL, 7muc:EL, 7muc:FL, 7muc:GL, 7muc:HL, 7muc:IL, 7muc:JL, 7muc:KL, 7muc:LL, 7muc:AL, 7mud:BL, 7mud:CL, 7mud:DL, 7mud:EL, 7mud:FL, 7mud:GL, 7mud:HL, 7mud:IL, 7mud:JL, 7mud:KL, 7mud:LL, 7mud:ML, 7mud:AL, 7muq:HL, 7muq:IL, 7muq:JL, 7muq:KL, 7muq:LL, 7muq:ML, 7muq:AL, 7muq:BL, 7muq:CL, 7muq:DL, 7muq:EL, 7muq:FL, 7muq:GL, 7mus:HL, 7mus:IL, 7mus:JL, 7mus:KL, 7mus:LL, 7mus:ML, 7mus:AL, 7mus:BL, 7mus:CL, 7mus:DL, 7mus:EL, 7mus:FL, 7mus:GL, 7muv:FL, 7muv:GL, 7muv:HL, 7muv:IL, 7muv:JL, 7muv:KL, 7muv:LL, 7muv:ML, 7muv:AL, 7muv:BL, 7muv:CL, 7muv:DL, 7muv:EL, 7muw:FL, 7muw:GL, 7muw:HL, 7muw:IL, 7muw:JL, 7muw:KL, 7muw:LL, 7muw:ML, 7muw:AL, 7muw:BL, 7muw:CL, 7muw:DL, 7muw:EL, 7muy:FL, 7muy:GL, 7muy:HL, 7muy:IL, 7muy:JL, 7muy:KL, 7muy:LL, 7muy:ML, 7muy:AL, 7muy:BL, 7muy:CL, 7muy:DL, 7muy:EL
8 5lkw:A 119 103 0.1154 0.2521 0.2913 5.01e-11 5lkw:B, 5n2c:A, 5n2c:B, 5n2c:C
9 6top:A 154 88 0.1231 0.2078 0.3636 8.82e-10 6top:B, 6top:C, 6top:D
10 4rha:A 131 112 0.1385 0.2748 0.3214 2.51e-08 4rha:B, 5ves:B
11 4pwt:C 123 116 0.1308 0.2764 0.2931 1.59e-07
12 7muq:GK 151 94 0.1000 0.1722 0.2766 9.65e-06 7muq:LK, 7muq:MK, 7muq:BK, 7muq:DK, 7mus:GK, 7mus:HK, 7mus:IK, 7mus:JK, 7mus:LK, 7mus:AK, 7muv:EK, 7muv:FK, 7muv:HK, 7muv:IK, 7muv:MK, 7muv:BK, 7muw:EK, 7muw:GK, 7muw:JK, 7muw:KK, 7muw:LK, 7muw:MK, 7muw:BK, 7muy:FK, 7muy:GK, 7muy:IK, 7muy:AK, 7muy:BK
13 3fby:A 535 163 0.2000 0.0972 0.3190 1.32e-05 3fby:B, 3fby:C
14 3cyq:D 132 89 0.1077 0.2121 0.3146 2.27e-04 3cyq:K
15 3oon:A 113 85 0.1038 0.2389 0.3176 3.71e-04
16 2rhp:A 622 103 0.1423 0.0595 0.3592 6.52e-04 1yo8:A
17 2rhp:A 622 101 0.1231 0.0514 0.3168 0.020 1yo8:A
18 2rhp:A 622 157 0.1885 0.0788 0.3121 1.0 1yo8:A
19 5y3z:B 142 77 0.1077 0.1972 0.3636 7.38e-04 5y3z:A
20 6u83:A 154 112 0.1192 0.2013 0.2768 0.007
21 1ux6:A 335 110 0.1346 0.1045 0.3182 0.13
22 5mwc:D 275 59 0.0769 0.0727 0.3390 1.1
23 3qur:A 249 80 0.0962 0.1004 0.3125 1.5 3qun:A
24 1xoc:A 504 13 0.0385 0.0198 0.7692 8.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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