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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SIYLPLPQADDQYTPYFVYNFQGERVSTTETGVFCLAAIPAATTSSRYNNQITIPSIGYRGTGTLFLLDAASWWNILDVT
QTGVLFGQPRLGVGVMQTMKTLKQHIKDYTEPAIQKYYPGTTNLDEQLKQRLNLAEGDPVISMGDTNGRRAALFYRTSDE
KYILFFSTTEDPGAQYQNLKMLYFWNWSYSDTKQQFLDHLRTVQF

The query sequence (length=205) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3ts3:B 205 205 1.0000 1.0000 1.0000 1.05e-154 3ts3:C, 3ts3:D
2 6hv9:5 628 44 0.0683 0.0223 0.3182 0.54
3 8fkp:SH 150 63 0.0976 0.1333 0.3175 0.74 8fkq:SH, 8fkr:SH, 8fks:SH, 8fkt:SH, 8fku:SH, 8fkv:SH, 8fkw:SH, 8fkx:SH, 8fky:SH, 8fkz:SH, 8fl2:SH, 8fl6:SH, 8fla:SH, 8fld:SH, 8ine:t, 8inf:t, 8ipx:t, 8ipy:t, 8ir3:t
4 8anp:D 391 58 0.1073 0.0563 0.3793 2.0
5 8anp:A 417 58 0.1073 0.0528 0.3793 2.2
6 8anp:B 454 58 0.1073 0.0485 0.3793 2.2
7 6tbu:A 842 59 0.0829 0.0202 0.2881 2.8
8 3lgx:A 508 64 0.0829 0.0335 0.2656 3.3 3lgx:B, 3lgx:C, 3lgx:D
9 3ajb:A 293 65 0.0829 0.0580 0.2615 5.4
10 7vd5:Q 151 71 0.0976 0.1325 0.2817 6.2 7vd5:q
11 6twi:E 323 66 0.1024 0.0650 0.3182 7.8 4cyw:A, 4cyw:C, 4cyw:E, 4cyz:A, 4cyz:E, 4cz0:A, 4cz0:E, 4cz0:C, 4d00:A, 4d00:C, 4d00:E, 4qy1:E, 4qy1:G, 4qy1:I, 4qy1:U, 4qy2:E, 5tgu:C, 5tgu:E, 5tgu:A, 5tgv:A, 5tgv:C, 5tgv:E, 5th1:A, 5th1:C, 5th1:E, 5thc:E, 5thc:C, 6tva:A, 6tva:C, 6tva:E, 6tvb:A, 6tvb:C, 6tvb:E, 6tvd:A, 6tvd:C, 6tvd:E, 6tvd:G, 6tvd:I, 6tvd:K, 6tvf:A, 6tvf:C, 6tvf:E, 6tvf:G, 6tvf:K, 6tvf:I, 6tvr:K, 6tvs:C, 6tvs:E, 6tvs:K, 6tvt:A, 6tvt:C, 6tvt:E, 6twi:A, 6twi:C, 6twv:C, 6twv:E, 6twv:K, 6twv:G, 6twv:I, 6txo:A, 6txo:C, 6txo:E, 6ty1:A, 6ty1:C, 6ty1:E, 6ty1:G, 6ty1:I, 6ty1:K, 4xqo:A, 4xqo:C, 4xqu:A, 4xqu:C, 4xqu:E
12 2g38:B 173 66 0.1073 0.1272 0.3333 9.8 2g38:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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