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BioLiP
>protein
SISPETINVAGAQRMLSQKMAREALQLRLGAGDPKALAATIAQYERSAADLDAGNAERNVSRMGAPEIAAQRQKVAQIWG
RYRAMLDQVAQPASQVDLRGFSQYSTELLGELNNLVSLMSARAD

The query sequence (length=124) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6gcv:A 126 124 1.0000 0.9841 1.0000 1.89e-86 6gcv:B, 6gcv:C
2 7uyy:A 496 70 0.1855 0.0464 0.3286 1.2 7uyy:B
3 6hfw:A 429 55 0.1129 0.0326 0.2545 1.9 4fdn:A, 4fdo:A, 4fdp:A, 4fdp:B, 4feh:A, 4ff6:A, 4ff6:B, 6g83:A, 6g83:B, 6hez:A, 6hez:B, 6hf0:A, 6hf0:B, 6hf3:A, 6hf3:B, 6hfv:A, 6hfv:B, 6hfw:B, 4kw5:A, 4kw5:B, 4ncr:A, 4ncr:B, 5oel:B, 5oep:A, 5oep:B, 5oeq:A, 5oeq:B, 4p8c:B, 4p8h:A, 4p8h:B, 4p8k:B, 4p8l:B, 4p8m:A, 4p8n:B, 4p8p:B, 4p8t:B, 4p8y:B, 4pfa:A, 4pfa:B, 4pfd:A
4 7dlm:A 280 41 0.1048 0.0464 0.3171 2.0 7dlm:B, 7dn1:A, 7vyq:A, 7vyq:B, 7vyq:F, 7vyq:G
5 7dn1:B 280 36 0.1048 0.0464 0.3611 3.9 7dll:A, 7dll:B, 7dmg:A, 7dmg:B
6 6xn1:B 333 62 0.1774 0.0661 0.3548 4.7 6xn1:A, 6xn2:B, 6xn2:A
7 3ieu:A 293 53 0.1210 0.0512 0.2830 6.6 3ieu:B
8 1ubw:A 348 19 0.0806 0.0287 0.5263 9.4 1ubx:A, 1uby:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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