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BioLiP
>protein
SHMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYYQ

The query sequence (length=75) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4pyu:A 76 75 1.0000 0.9868 1.0000 9.54e-52 4pyu:B, 4pyu:G, 4pyu:K, 4pyu:O, 4pyu:S, 8q7n:s
2 3plv:A 80 74 0.6533 0.6125 0.6622 2.19e-32 3plu:A, 3plu:B
3 5w4l:G 357 45 0.2267 0.0476 0.3778 0.009 6bf4:G, 8dcq:A, 4dko:A, 4dko:C, 4dkp:A, 4dkp:C, 4dkq:A, 4dkr:A, 4dkr:C, 4dku:A, 4dku:B, 4dkv:A, 4dkv:B, 4dvs:A, 4dvs:B, 4dvt:A, 4dvt:B, 4dvv:A, 4dvv:B, 4dvw:A, 4dvw:B, 4dvx:A, 4dvx:B, 8f9z:A, 8fa0:A, 8gcz:A, 8gd0:A, 8gd1:A, 8gd3:A, 8gd5:A, 8gdj:A, 8gdk:A, 8gjt:A, 4i54:A, 4i54:B, 5kjr:G, 4lsq:G, 6mfp:G, 6mfp:A, 6mg7:G, 7n8q:G, 3ngb:G, 3ngb:A, 3ngb:D, 3ngb:I, 6one:A, 6onf:A, 6onh:A, 6onv:A, 6ooo:A, 6p9n:A, 4rfn:G, 4rfn:A, 4rfo:G, 4rz8:A, 4rz8:B, 4rz8:C, 4rz8:D, 3se9:G, 5u6e:A, 5u6e:B, 5uem:G, 6usw:A, 6ut1:A, 5w4l:A, 6w4m:G
4 7mxd:A 472 35 0.1867 0.0297 0.4000 0.38 7mxd:F, 7mxd:G, 7n28:A
5 6vpv:B 737 27 0.1733 0.0176 0.4815 0.55 8am5:b, 8asl:b, 8asp:b, 6hqb:B, 4kt0:B, 4l6v:B, 4l6v:b, 4l6v:2, 6nwa:B, 6nwa:b, 6nwa:G, 7o1v:B, 5oy0:B, 5oy0:b, 5oy0:2, 7umh:B, 7umh:G, 7umh:b, 6uzv:B, 6uzv:b, 6uzv:2, 6vpv:b, 6vpv:2
6 7qco:B 734 27 0.1733 0.0177 0.4815 0.58 7qco:G, 7qco:g, 7qco:b
7 7f4v:aB 725 27 0.1733 0.0179 0.4815 0.70 7f4v:bB, 7f4v:cB
8 6lu1:B 713 27 0.1733 0.0182 0.4815 0.73
9 7fix:B1 740 27 0.1733 0.0176 0.4815 0.73 7bw2:B, 4fe1:B, 7fix:B2, 7fix:B3, 1jb0:B, 6k33:aB, 6k33:bB, 6k33:cB, 7m75:B, 7m76:B, 7m78:B, 3pcq:B, 6pfy:H, 6pfy:B, 6pfy:Z, 6pgk:H, 6pgk:B, 6pgk:Z, 6tra:B, 6trc:B, 6trc:b, 6trc:2, 6trd:B, 6trd:b, 6trd:2, 5zf0:B1, 5zf0:B2, 5zf0:B3, 5zf0:B4, 5zf0:B6, 5zf0:B5
10 8d53:G 446 51 0.2400 0.0404 0.3529 0.83
11 7dwq:B 659 27 0.1733 0.0197 0.4815 0.89 7coy:aB, 7coy:bB, 7coy:cB
12 7blz:B 731 27 0.1733 0.0178 0.4815 0.97 6fos:B, 8wey:B, 5zgb:B, 5zgh:B
13 6kif:B 733 27 0.1733 0.0177 0.4815 0.97 6kif:H, 6kif:f, 6kig:B, 6kig:H, 6kig:f
14 6kmw:aB 740 27 0.1733 0.0176 0.4815 0.97 6kmw:cB, 6kmw:bB
15 7yca:B 732 27 0.1600 0.0164 0.4444 1.4
16 7y5e:BN 732 27 0.1600 0.0164 0.4444 2.0 7y5e:B2, 7y7a:B7, 7y7a:Bo, 7y7b:B, 7y8a:B
17 6ly5:b 732 27 0.1733 0.0178 0.4815 2.7 6l4u:B
18 6pwu:A 615 51 0.2133 0.0260 0.3137 2.8 6j5e:I, 6ulc:C, 6ulc:A, 3vtp:C, 5yb2:E, 5yb2:F, 5yb2:D, 5yb2:A, 5yb2:B, 5yb2:C, 5yb2:M, 5yb3:E, 5yb3:F, 5yb3:D, 5yc0:A, 5yc0:D, 5yc0:E, 5z0w:E, 5zcx:A, 5zpw:A, 5zpw:E, 5zpw:C
19 7d0j:B 734 27 0.1600 0.0163 0.4444 2.9 7a4p:B, 7bgi:B, 7blx:B, 8cmo:B, 7dz7:B, 7dz8:B, 8h2u:B, 6ijj:B, 6ijo:B, 6jo5:B, 6jo6:B, 6qph:B, 7r3k:B, 6rhz:B, 6sl5:B, 7wyi:B, 7wzn:B, 6yxr:B, 7zq9:B, 7zqc:B, 7zqd:B, 7zqd:B2, 6zzx:B, 6zzy:B
20 7abr:F 536 35 0.1467 0.0205 0.3143 3.4
21 8czz:A 440 35 0.1733 0.0295 0.3714 3.4 8czz:E, 8czz:I
22 6lpi:B 539 30 0.1200 0.0167 0.3000 4.9 6lpi:A, 6lpi:C, 6lpi:D
23 7s3d:B 742 24 0.1467 0.0148 0.4583 5.2 7s3d:H, 7s3d:b
24 4v3g:A 330 58 0.2000 0.0455 0.2586 5.3 4d5b:A, 4d5b:B, 4d5d:A, 4d5d:B, 4v3g:B, 4v3h:A, 4v3h:B
25 3h8o:A 206 43 0.1467 0.0534 0.2558 6.2 3btx:A, 3bty:A, 3btz:A, 3bu0:A, 3buc:A, 3h8r:A, 3h8x:A, 4mg2:A, 4mgt:A, 3rzg:A, 3rzh:A, 3rzj:A, 3rzk:A, 3rzl:A, 3rzl:D, 3rzm:A, 3s57:A, 3s5a:A
26 8tgw:A 387 37 0.1600 0.0310 0.3243 7.5
27 4zm6:A 844 15 0.0933 0.0083 0.4667 8.1 4zm6:B
28 8wm6:B 732 27 0.1600 0.0164 0.4444 9.1 8wmj:B, 8wmv:B, 8wmw:B
29 4kc8:A 449 63 0.2133 0.0356 0.2540 9.2
30 5aj4:Bx 162 37 0.1733 0.0802 0.3514 9.3 6gaw:Bx, 6gb2:Bx, 7nqh:Bx, 7nql:Bx, 7nsh:Bx, 7nsi:Bx, 7nsj:Bx, 8oin:Bh, 8oiq:Bh, 4v1a:x, 6ydp:Bx, 6ydw:Bx
31 5w81:A 1173 16 0.1067 0.0068 0.5000 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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