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BioLiP Library
>protein
SHDCAKVDLENAELRRKLIRTKRAFEDTYEKLRMANKAKAQVEKDIKNQILKTHNVLRNVR

The query sequence (length=61) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5mw9:A 66 61 1.0000 0.9242 1.0000 4.84e-39 5i7c:A, 5i7c:B, 5i7c:C, 5i7c:D, 5mvw:A, 5mvw:B, 5mw0:A, 5mw0:B, 5mw9:B, 5mw9:E, 5mw9:F, 5mwe:A, 5mwe:B
2 8ovo:A 503 43 0.2295 0.0278 0.3256 0.68 8ovo:B, 8ovp:A, 8ovp:B, 2vha:A, 2vha:B
3 3cgb:A 444 39 0.1967 0.0270 0.3077 2.7 3cgb:B, 3cgc:A, 3cgc:B, 3cgd:A, 3cgd:B, 3cge:A, 3cge:B
4 6qfo:A 1348 41 0.2131 0.0096 0.3171 3.7 8a19:A, 8a1a:A, 6qep:A, 6qev:B, 6qfk:A, 6sh9:B, 2zxq:A
5 6ob5:D 151 27 0.1803 0.0728 0.4074 4.8
6 5ocu:K 333 27 0.1639 0.0300 0.3704 4.9 5ogc:K
7 7b4u:A 129 28 0.1639 0.0775 0.3571 7.1 7b4u:C, 7b4v:C, 7b4v:A
8 5csl:A 2050 39 0.2295 0.0068 0.3590 8.5
9 7aih:B 435 36 0.1967 0.0276 0.3333 8.8 7am2:B, 7ane:B
10 7b6w:AAA 438 35 0.1967 0.0274 0.3429 9.2
11 3x1l:A 573 45 0.2459 0.0262 0.3333 9.4
12 7dng:A 161 28 0.1639 0.0621 0.3571 10.0 7dnf:A, 7dnf:C, 7dnf:D, 7dnf:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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