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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SGSKFRGHQKSKGNSYDVEVVLQHVDTGNSYLCGYLKIKGLTEEYPTLTTFFEGEIISKKHPFLTRKWDADEDVDRKHWG
KFLAFYQYAKSFNSDDFDYEELKNGDYVFMRWKEQFLVPDHTIKDISGASFAGFYYICFQKSAASIEGYYYHRSSEWYQS
LNLTHV

The query sequence (length=166) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7q50:A 170 166 1.0000 0.9765 1.0000 7.28e-124 6cct:A, 6ccu:A, 6cd8:A, 6cd8:B, 6cd9:A, 6cdc:A, 6cdg:A, 7s12:A, 7slz:A, 7u3e:A, 7u3e:B, 7u3f:A, 7u3g:A, 7u3h:A, 7u3i:A, 7u3i:B, 7u3j:A, 7u3k:A, 7u3l:A, 8v1p:A, 6wzx:A, 6wzx:B, 6wzz:A
2 7ns3:4 199 179 0.3675 0.3065 0.3408 2.92e-27
3 7qqy:A 216 193 0.3735 0.2870 0.3212 1.30e-23 7q51:A
4 3cew:A 118 61 0.1205 0.1695 0.3279 0.085 3cew:B, 3cew:C, 3cew:D
5 6l8h:A 466 92 0.1506 0.0536 0.2717 0.48 6l8h:B, 6l8h:C, 6l8h:D
6 4n7t:A 402 98 0.1687 0.0697 0.2857 1.4 3m7v:A, 3m7v:B, 4n7t:B
7 5ykb:D 523 83 0.1024 0.0325 0.2048 1.4 5ykb:B
8 4eu2:N 233 69 0.0964 0.0687 0.2319 2.6 5d0t:M, 4eu2:2, 5l5w:M, 4q1s:a, 4q1s:M
9 3bxu:A 71 47 0.0843 0.1972 0.2979 3.2 3bxu:B
10 6g21:A 504 28 0.0723 0.0238 0.4286 5.1 6g21:B
11 8ghc:A 662 59 0.0964 0.0242 0.2712 6.2 8ghb:A, 8ghc:B, 8ghd:A, 8ghd:B, 8ghd:C, 8ghd:D, 8ghd:E, 8ghd:F, 8ghe:B, 8ghe:C, 8ghe:D, 8ghe:A
12 3d3l:A 451 50 0.0843 0.0310 0.2800 6.2 3d3l:B
13 8h2b:D 370 46 0.0783 0.0351 0.2826 8.1 8h2b:A, 8h2b:B, 8h2b:C
14 6j15:D 106 35 0.0602 0.0943 0.2857 8.2
15 4yan:A 252 122 0.1747 0.1151 0.2377 8.9 4yan:B, 4yan:C, 4yan:D
16 6jjp:F 118 35 0.0602 0.0847 0.2857 8.9 8as0:A, 8as0:F, 8as0:I, 8as0:L, 8as0:O, 8as0:R, 8as0:X, 8as0:Y, 7cu5:Q, 6j15:C, 6jbt:F, 6jjp:C, 6umt:A, 5wt9:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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