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BioLiP
>protein
SGKKPVKVKTPAGKEAELVPEKVWALGRVKIGLFKDPETGKYFRHKLPDDYPI

The query sequence (length=53) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5k17:A 59 58 1.0000 0.8983 0.9138 6.82e-29 6a2h:A, 6a2i:A, 6a2i:B, 5k07:A, 5k17:B, 3kxt:A, 3lwh:A, 3lwi:A, 3lwi:B, 4r55:A, 4r56:A, 4r56:B, 5wvw:A, 5wvw:B, 5wvy:A, 5wvy:B, 5wvz:A, 5wvz:B, 5wwc:A, 5wwc:B
2 8x2i:A 2303 20 0.1698 0.0039 0.4500 0.45
3 8x2h:A 2363 20 0.1698 0.0038 0.4500 0.45 8jb5:A, 2vkd:A, 2vkd:B, 2vkd:C, 2vkh:A, 2vkh:B, 2vkh:C, 2vl8:A, 2vl8:B, 2vl8:C
4 6nnw:A 208 47 0.3019 0.0769 0.3404 0.51 6nnw:B
5 2vun:A 385 22 0.1887 0.0260 0.4545 2.1 2vun:B, 2vun:C, 2vun:D
6 6oq5:A 2346 20 0.1698 0.0038 0.4500 2.2 6oq7:A, 7s0z:B, 7s0z:A
7 8qen:A 2363 20 0.1698 0.0038 0.4500 2.2 9bja:A, 9bja:B, 2bvl:A, 2bvm:A, 6c0b:A, 7lou:A, 7lou:B, 7lov:A, 7lov:B, 3pa8:A, 3pa8:B, 3pee:B, 3pee:A, 7s0y:A, 5uqm:A, 5uqn:A, 5uqt:A, 5uqt:B
8 3a4z:A 402 17 0.1698 0.0224 0.5294 2.5 3a4g:A, 3a4h:A, 3a4z:B, 3a4z:C, 3a4z:D, 3a4z:E, 3a50:A, 3a50:B, 3a50:C, 3a50:D, 3a50:E, 3a51:A, 3a51:B, 3a51:C, 3a51:D, 3a51:E, 5gnl:A, 5gnm:A, 5gnm:B, 5gnm:C, 5gnm:D, 3vrm:A
9 7aih:BH 214 22 0.2264 0.0561 0.5455 3.5 7am2:BH, 7ane:BH
10 5kar:A 412 31 0.1698 0.0218 0.2903 5.0 5kas:A
11 5zme:A 638 41 0.3019 0.0251 0.3902 7.3 5zmf:A
12 4nrk:C 341 30 0.2453 0.0381 0.4333 8.6 4nrk:A, 4nrk:E, 4nrl:A, 4nrl:C, 4nrl:E
13 8exs:A 556 13 0.1509 0.0144 0.6154 9.6 8c0p:A, 8c0p:B, 8c0s:A, 8c0s:B, 8cf3:C, 8cf3:E, 8exp:A, 8exp:B, 8exq:B, 8exq:A, 8exr:B, 8exr:A, 8exs:B, 8ext:A, 8ext:B, 6o9w:B, 3q7z:A, 3q7z:B, 3q81:A, 3q81:B, 3q82:A, 3q82:B, 1xa1:A, 1xa1:B, 1xa1:C, 1xa1:D, 1xa7:A, 1xa7:B, 1xkz:A, 1xkz:B, 1xkz:C, 1xkz:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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