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BioLiP
>protein
SGIPGSPGRQRRHTLPANEFRCLTPEDAAGVFEIEREAFISVSGNCPLNLDEVQHFLTLCPELSLGWFVEGRLVAFIIGS
LWDEERLTQESLALHRPRGHSAHLHALAVHRSFRQQGKGSVLLWRYLHHVGAQPAVRRAVLMCEDALVPFYQRFGFHPAG
PCAIVVGSLTFTEMHCSLR

The query sequence (length=179) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1ib1:E 179 179 1.0000 1.0000 1.0000 1.77e-131 1cjw:A, 1ib1:F, 1ib1:G, 1ib1:H, 1kuv:A, 1kux:A, 1kuy:A, 1l0c:A
2 1i1d:D 161 62 0.1061 0.1180 0.3065 1.28e-04 1i12:A, 1i12:B, 1i12:C, 1i12:D, 1i1d:A, 1i1d:B, 1i1d:C
3 4pv6:G 154 142 0.2067 0.2403 0.2606 5.10e-04 4pv6:C, 4pv6:I, 4pv6:F, 4pv6:A, 4pv6:H, 4pv6:J, 4pv6:E
4 3s6f:A 143 59 0.1229 0.1538 0.3729 0.001
5 5kf2:A 317 61 0.0950 0.0536 0.2787 0.002 5kf1:A, 5kf1:B, 5kf8:A, 5kf9:A, 5kga:A, 5kga:B, 5kgh:A, 5kgh:B, 5kgj:A, 5kgp:A, 5kgp:B
6 5kf2:A 317 51 0.0894 0.0505 0.3137 5.0 5kf1:A, 5kf1:B, 5kf8:A, 5kf9:A, 5kga:A, 5kga:B, 5kgh:A, 5kgh:B, 5kgj:A, 5kgp:A, 5kgp:B
7 4ag7:A 165 59 0.1117 0.1212 0.3390 0.008 4ag7:B, 4ag9:A, 4ag9:B
8 6tdf:A 165 92 0.1564 0.1697 0.3043 0.16 6tdg:A, 6tdh:A, 2vez:A, 2vxk:A
9 4qvt:D 146 68 0.1061 0.1301 0.2794 0.18 2pdo:H, 2pdo:B, 4qvt:A, 4qvt:B, 4qvt:C, 4qvt:E, 4qvt:F, 4qvt:G, 4qvt:H
10 5hgz:A 211 103 0.1397 0.1185 0.2427 0.39 5hh0:A, 5hh1:A, 5icv:A, 5icv:B, 5icw:A, 5icw:B, 5icw:C, 5icw:D
11 6bhx:C 102 40 0.0726 0.1275 0.3250 1.7 6bhx:A, 6bhx:B
12 7uci:A 686 99 0.1508 0.0394 0.2727 2.0 7uci:B
13 8r3o:B 667 67 0.1117 0.0300 0.2985 2.8 8r3o:A, 8r3o:C, 8r3o:D
14 5lzt:jj 428 31 0.0615 0.0257 0.3548 3.8 4d61:i, 5hxb:X, 5hxb:A, 7nwh:jj, 6xk9:X, 6xk9:A
15 2a3l:A 616 140 0.2067 0.0601 0.2643 4.0
16 8oui:C 429 62 0.0950 0.0396 0.2742 6.3 8oui:B
17 4h19:A 372 86 0.1117 0.0538 0.2326 7.5 4h19:B, 4h19:C, 4h19:D, 4h19:F, 4h19:E, 4h19:G, 4h19:H, 4h19:I, 4h19:K, 4h19:L, 4h19:M, 4h19:N, 4h19:P, 4h19:J, 4h19:O
18 7wtt:u 642 33 0.0782 0.0218 0.4242 9.2 6g18:u, 6g4s:u, 6g4w:u, 6g51:u, 7wts:u, 7wtu:u, 7wtv:u, 7wtw:u, 7wtx:u, 7wtz:u, 7wu0:u, 6zmt:u, 6zn5:u

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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