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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SGGKKFILELIETVYEEILDLEANLRNGQQTDSTAMWEALHIDDSSYDVNPFISMLSFDKGIKIMPRIFNFLDKQQKLKI
LQKIFNELSHLQIIILSSYKTTPKPTLTQLKKVDLFQMIILKIIVSFLSNNSNFIEIMGLLLQLIRNNNVSFLTTSKIGL
NLITILISRAALIKQSTWNEIYDKLFTSLESKIQLIFPPREYNDHIMRLQNDKFMDEAYIWAFLASLAASGKLNHQRIII
DEVRDEIFATINEAETLQKKEKELSVLPQRSQELDTELKSIIYNKEKLYQDLNLFLNVMGLVYRDGEISELK

The query sequence (length=312) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5lmg:B 321 324 0.9872 0.9595 0.9506 0.0 5lm5:A, 5lm5:B, 5lmf:B, 5lmf:A, 5lmg:A
2 4gzk:A 650 67 0.0641 0.0308 0.2985 5.1 4ieg:A, 4ieg:B, 4ieg:C, 4ieg:D
3 5fv0:B 458 114 0.0769 0.0524 0.2105 6.5
4 4fjv:A 231 57 0.0513 0.0693 0.2807 7.9 8cms:AAA, 4fjv:C, 5qio:A, 5qip:A, 5qiq:A, 5qir:A, 5qis:A, 5qit:A, 5qiu:A, 5qiv:A, 5qiw:A, 5qix:A, 5qiy:A, 5qiz:A
5 8b9a:2 568 79 0.0769 0.0423 0.3038 10.0 8b9b:2, 8b9c:2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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