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BioLiP
>protein
SGDETKTVEGNGTILVKGNVTIIVEGNADITVKGDATTLVEGNQTNTVNGNLSWKVAGTVDWDVGGDWTEKMASMSSISS
GQYTIDGSRIDIG

The query sequence (length=93) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4jiv:C 93 92 0.9355 0.9355 0.9457 5.09e-55 4jj2:A, 4ku0:A, 4ku0:C, 4osd:A, 4osd:B, 4osd:G, 4osd:J, 6p1z:A, 6p1z:E, 6p1z:F, 6p1z:G
2 6p20:A 110 83 0.8602 0.7273 0.9639 4.90e-50
3 6p2a:C 146 93 0.8710 0.5548 0.8710 1.28e-47 6p2a:A, 6p2a:B, 6p2a:D, 6p2a:E, 6p2a:F
4 8kea:D 245 54 0.2043 0.0776 0.3519 0.036 8kea:F, 8kea:E
5 8kea:D 245 59 0.1828 0.0694 0.2881 0.30 8kea:F, 8kea:E
6 5gug:A 1721 58 0.1828 0.0099 0.2931 0.45 5gug:B, 1n4k:A, 3t8s:B, 3uj0:A, 3uj0:B, 5xa1:A, 5xa1:B
7 6mu1:A 2149 59 0.1828 0.0079 0.2881 0.61 6mu1:C, 6mu1:B, 6mu1:D
8 7lhf:C 2300 59 0.1828 0.0074 0.2881 0.61 7lhe:A, 7lhe:D, 7lhe:C, 7lhe:B, 7lhf:A, 7lhf:D, 7lhf:B
9 8ear:A 2389 59 0.1828 0.0071 0.2881 0.61 8eaq:A, 8eaq:B, 8eaq:C, 8eaq:D, 8ear:D, 8ear:B, 8ear:C
10 7nvn:Z 529 53 0.1935 0.0340 0.3396 0.99 8i1u:F, 8i1u:N, 8i9u:F, 8i9u:N, 7nvl:Z, 7nvl:z, 7nvm:Z, 7nvm:z, 7nvn:z, 8sfe:z, 8sfe:Z, 8sff:Z, 8sff:z, 8sg8:Z, 8sg8:z, 8sg9:Z, 8sg9:z, 8sgc:Z, 8sgc:z, 8sgl:Z, 8sgl:z, 8sgq:z, 8sgq:Z, 8sh9:Z, 8sh9:z, 8sha:Z, 8sha:z, 8shd:Z, 8shd:z, 8she:Z, 8she:z, 8shf:Z, 8shf:z, 8shg:Z, 8shg:z, 8shl:Z, 8shl:z, 8shn:Z, 8shn:z, 8sho:Z, 8sho:z, 8shp:Z, 8shp:z, 8shq:Z, 8shq:z, 8sht:Z, 8sht:z, 7trg:I, 7ttn:I, 7ttt:I, 7tub:I, 7wu7:F, 7wu7:N, 7wz3:Z, 7wz3:z, 7x0s:K, 7x0s:z, 7x0v:K, 7x0v:z, 7x3j:Z, 7x3j:z, 7x3u:Z, 7x3u:z
11 8hki:Z 255 53 0.1935 0.0706 0.3396 1.9
12 7nvo:Z 323 53 0.1935 0.0557 0.3396 2.1 8hki:z, 7nvo:z
13 4eyu:A 456 43 0.1398 0.0285 0.3023 4.9 4ask:A, 4ask:B, 4eyu:B, 4ez4:A, 4ez4:B, 4ezh:A, 4ezh:B, 6f6d:A, 5fp3:A, 5fp3:B, 5oy3:A, 2xue:A, 2xue:B, 2xxz:A, 2xxz:B
14 1bxw:A 172 37 0.1075 0.0581 0.2703 6.4 9fzc:A, 9fzc:B
15 6ful:A 478 43 0.1398 0.0272 0.3023 7.1 5a1l:A, 5a1l:B, 3avr:A, 3avs:A, 6fuk:A, 5fxv:A, 5fxv:B, 5fxw:A, 5fxw:B, 5fxx:A, 5fxx:B, 5fxz:A, 5fxz:B, 5fy0:A, 5fy0:B, 5fy1:A, 5fy1:B, 5fy7:A, 5fy7:B, 5fym:A, 5fym:B, 6g8f:A, 4uf0:A, 4uf0:B, 3zli:A, 3zli:B, 3zpo:A, 3zpo:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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