Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SFTGKPLLGGPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERD
TKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAA
SIATHMRPYRKKS

The query sequence (length=173) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2gqk:A 173 173 1.0000 1.0000 1.0000 2.96e-128 2ggt:A, 2ggt:B, 2gql:A, 2gqm:A, 2gt6:A, 2hrf:A, 2hrn:A
2 2rli:A 170 171 0.5087 0.5176 0.5146 1.30e-67
3 6n5u:A 161 162 0.4509 0.4845 0.4815 5.59e-57 6n5u:B, 6n5u:C
4 2b7j:A 158 166 0.3815 0.4177 0.3976 6.57e-40 2b7j:C
5 4wbr:D 157 159 0.3699 0.4076 0.4025 7.71e-37
6 1xzo:A 172 146 0.2486 0.2500 0.2945 8.34e-08 1xzo:B
7 5ume:E 292 78 0.1618 0.0959 0.3590 0.007 5ume:A, 5ume:B, 5ume:C, 5ume:D, 5ume:F
8 7rml:A 281 72 0.1272 0.0783 0.3056 0.066 7rml:B, 7rml:C
9 6t4h:A 771 63 0.1272 0.0285 0.3492 0.56
10 2fsh:A 691 82 0.1503 0.0376 0.3171 0.71 3bxz:A, 3bxz:B, 2fsg:A, 2fsi:A
11 1nkt:A 836 64 0.1156 0.0239 0.3125 1.2 1nkt:B
12 8etp:D 441 96 0.1734 0.0680 0.3125 1.3 8eu3:D, 8euc:D, 8ev8:D, 8ev9:D, 8eva:D, 8evb:D, 8evc:D
13 6em0:A 566 31 0.0751 0.0230 0.4194 1.6 5brt:A, 5brt:B, 6em0:B, 4z2r:A, 4z2r:B, 4z2t:A, 4z2t:B, 4z2u:A, 4z2u:B
14 4cy8:A 539 31 0.0751 0.0241 0.4194 1.6 4cy8:B, 4cy8:C, 4cy8:D
15 7r04:A 2326 43 0.0751 0.0056 0.3023 1.8
16 7pgr:N 2423 43 0.0751 0.0054 0.3023 1.8 2d4q:A, 2d4q:B, 2e2x:B, 3p7z:B, 3pg7:B, 7pgq:F, 7pgr:F, 7pgs:F, 7pgt:F, 7pgu:F, 7pgu:N
17 5oyh:D 185 88 0.1272 0.1189 0.2500 2.5 6aob:B, 5oyh:A, 5oyh:B, 5oyh:C, 5oyh:E, 5oyh:F, 5oyh:G, 5oyh:H, 5oyh:I, 5oyh:J, 5oyh:K, 5oyh:L, 5oyh:M, 5oyh:N, 5oyh:O, 5oyh:P, 6sir:A, 6sir:B, 6sir:D, 6sir:C
18 7xp0:A 200 45 0.0751 0.0650 0.2889 3.1 7xp1:A
19 6ofq:A 512 98 0.1676 0.0566 0.2959 3.6 6pu3:A
20 5eul:A 746 53 0.1098 0.0255 0.3585 5.0
21 1b76:A 442 52 0.0809 0.0317 0.2692 5.2 1ati:B, 1b76:B, 1ggm:A, 1ggm:B
22 4xdi:A 127 84 0.1214 0.1654 0.2500 6.3 6cii:A, 4xdi:B
23 1m74:A 802 53 0.1098 0.0237 0.3585 6.5 2ibm:A, 6itc:A, 3jv2:A, 3jv2:B, 1tf2:A, 7xha:A, 7xhb:A
24 8a22:BD 270 32 0.0694 0.0444 0.3750 6.8 8apn:BC, 8apo:BD
25 2avu:E 156 26 0.0636 0.0705 0.4231 6.8 2avu:F

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218