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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SFSFGGFTFKRTSGSSVKKEEEVLTGNLQTLKIRVHEGYEEFTMVGRRATAILRKATRRLIQLIVSGRDEQSIAEAIIVA
MVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQNWGIESIDNVMGMIGILPDMTPSTEMSLRGIRVS
KM

The query sequence (length=162) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8bek:C 737 162 0.9753 0.2144 0.9753 6.53e-111 7as0:A, 7as1:A, 7as2:A, 7as3:A, 5buh:A, 4cb4:A, 4cb5:A, 4cb6:A, 4cb6:B, 4cb7:B, 5eg7:A, 4eqk:A, 4es5:A, 4es5:B, 4es5:C, 4es5:D, 6euv:A, 6euv:I, 6euv:C, 6euv:F, 6euw:A, 6euy:A, 6euy:B, 6euy:C, 5f79:A, 5fmm:A, 5fmq:A, 8h69:C, 5jun:A, 5jur:A, 4nce:A, 4ncm:A, 7nha:C, 7nhc:C, 7nhx:C, 7ni0:C, 7nik:C, 7nil:C, 7nir:C, 7nis:C, 7nj3:C, 7nj4:C, 7nj5:C, 7nj7:C, 7nk1:C, 7nk2:C, 7nk4:C, 7nk6:C, 7nk8:C, 7nka:C, 7nkc:C, 7nki:C, 7nkr:C, 4p1u:A, 8pm0:C, 8pnp:C, 8pnq:C, 7qtl:C, 7r0e:C, 8r3k:C, 8r3l:C, 8r60:C, 8r65:C, 6rr7:C, 6s5v:AAAA, 6s5v:ABAA, 2vqz:A, 2vqz:B, 2vqz:D, 2vqz:E, 2vqz:F, 3wi1:A, 5wl0:A, 7xme:A, 7xme:B, 7xme:C, 7xme:D, 4yd0:A
2 6evj:C 748 161 0.5988 0.1297 0.6025 1.57e-64 6evj:F, 6evk:C, 9f2r:C, 9f37:C, 6fhh:C, 6fhi:C, 5m3h:C, 6szu:C, 6szv:C, 6t0n:C, 6t0r:C, 6t0s:C, 6t0u:C, 6t0v:C, 6tw1:C, 4wsb:C
3 6eux:A 225 158 0.3642 0.2622 0.3734 5.47e-30
4 6qcs:C 742 158 0.3642 0.0795 0.3734 4.89e-28 8bdr:C, 8be0:C, 8bf5:C, 5efa:A, 5efc:A, 6f5o:C, 5m3j:C, 5msg:C, 4or4:A, 4or4:B, 4or6:A, 4or6:B, 4oro:A, 4oro:B, 4oro:C, 4oro:D, 4q46:A, 4q46:B, 6qct:C, 6qcv:C, 6qcw:C, 6qcx:C, 7r1f:C, 6t0w:C, 4wrt:C, 4wsa:C, 7z42:F, 7z43:CCC
5 7z42:C 718 158 0.3210 0.0724 0.3291 3.60e-20
6 6xzd:CP1 772 86 0.1296 0.0272 0.2442 0.008
7 7pk0:A 284 110 0.1296 0.0739 0.1909 0.049
8 5eix:J 679 51 0.1358 0.0324 0.4314 0.052 5eix:G, 7lhz:D
9 2eh6:A 375 24 0.0679 0.0293 0.4583 0.35 2eh6:B
10 7lhz:C 714 58 0.1358 0.0308 0.3793 1.5 5eix:A, 5eix:B, 7lhz:A, 6waa:B, 6waa:F
11 7cf9:A 3949 74 0.1296 0.0053 0.2838 1.8 7cf9:C, 7cf9:E, 7cf9:G, 8dtb:G, 8dtb:D, 6m2w:A, 6m2w:D, 6m2w:G, 6m2w:J
12 7lhz:B 631 38 0.0926 0.0238 0.3947 3.3
13 8dve:G 3944 74 0.1358 0.0056 0.2973 3.5 8dtb:A, 8dve:D, 8dve:A, 8dve:J
14 8duj:A 3823 74 0.1358 0.0058 0.2973 3.6
15 8duj:G 3933 74 0.1358 0.0056 0.2973 3.6
16 8duj:D 3865 74 0.1358 0.0057 0.2973 3.8
17 5vpw:C 495 37 0.0741 0.0242 0.3243 4.4
18 1mio:A 525 37 0.0741 0.0229 0.3243 4.4 1mio:C, 5vpw:A, 5vq3:A, 5vq3:C, 4wes:A, 4wes:C, 4wn9:A, 4wn9:C
19 6waa:H 656 19 0.0679 0.0168 0.5789 7.5 6waa:D
20 6eu9:B 227 68 0.0988 0.0705 0.2353 9.1 6eu9:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218