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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SFRLQPAPPARPNRCQLFGPGSRPALFEKMAASAADVINLDLEDSVAPDDKAQARANIIEAINGLDWGRKYLSVRINGLD
TPFWYRDVVDLLEQAGDRLDQIMIPKVGCAADVYAVDALVTAIERAKGRTKPLSFEVIIESAAGIAHVEEIAASSPRLQA
MSLGAADFAASMGMQTTGIGGTQENYYMLHDGQKHWSDPWHWAQAAIVAACRTHGILPVDGPFGDFSDDEGFRAQARRSA
TLGMVGKWAIHPKQVALANEVFTPSETAVTEAREILAAMDAAKARGEGATVYKGRLVDIASIKQAEVIVRQAEM

The query sequence (length=314) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4l9y:C 316 314 1.0000 0.9937 1.0000 0.0 4l9y:A, 4l9y:B, 4l9y:D, 4l9y:E, 4l9y:F, 4l9z:A, 4l9z:B, 4l9z:C, 4l9z:D, 4l9z:E, 4l9z:F
2 5ugr:A 323 319 0.5828 0.5666 0.5737 2.99e-125
3 4l80:C 347 315 0.3662 0.3314 0.3651 2.48e-60 6kkh:C, 6kkh:F, 6kkh:I, 6kkh:L, 4l80:A, 4l80:B, 4l80:D, 4l80:F, 4l80:E
4 5vxc:A 301 309 0.2771 0.2890 0.2816 3.55e-32 5vxo:A, 5vxo:B, 5vxo:C
5 1sgj:A 231 259 0.2548 0.3463 0.3089 3.05e-21 1sgj:B, 1sgj:C
6 6aq4:B 268 296 0.2962 0.3470 0.3142 1.74e-17 6aq4:A, 6aq4:C, 6arb:A, 6arb:B, 6arb:C, 6as5:A, 6as5:C, 6as5:B, 6chu:A, 6cj3:A, 6cj4:A, 1u5v:A, 1z6k:A
7 3r4i:A 321 281 0.2548 0.2492 0.2847 8.75e-17 3r4i:B, 3r4i:C, 3r4i:D, 3r4i:E, 3r4i:F
8 3oyz:A 376 326 0.2580 0.2154 0.2485 1.98e-12
9 5tao:A 356 260 0.2070 0.1826 0.2500 4.02e-12 3oyx:A, 3pug:A
10 8khl:A 275 300 0.2707 0.3091 0.2833 1.10e-11 8khl:B, 8khl:C, 8wco:A, 8wco:C, 8wco:B
11 3bs8:A 430 139 0.1051 0.0767 0.2374 1.5
12 8bz6:A 606 86 0.0764 0.0396 0.2791 2.9 8bz6:B, 8bz6:C, 8bz6:D, 8bz6:E, 8bz6:F, 8bz7:A, 8bz7:B, 8bz7:C, 8bz7:D, 8bz7:E, 8bz7:F, 8bz8:A, 8bz8:B, 8bz8:C, 8bz8:D, 8bz8:E, 8bz8:F
13 3pm9:A 465 56 0.0637 0.0430 0.3571 7.1 3pm9:B, 3pm9:C, 3pm9:D, 3pm9:E, 3pm9:F
14 3cux:A 501 34 0.0478 0.0299 0.4412 7.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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