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BioLiP
>protein
SFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILK

The query sequence (length=75) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3clc:B 77 75 1.0000 0.9740 1.0000 9.14e-48 3clc:A, 3clc:C, 3clc:D, 4i8t:A, 4ivz:A, 4ivz:B, 4ivz:E, 4ivz:F, 4iwr:A, 4iwr:B, 4iwr:E, 4iwr:F, 3s8q:A, 3s8q:B, 3ufd:A, 3ufd:B, 3ufd:E, 3ufd:F, 4x4b:A, 4x4b:B, 4x4b:C, 4x4b:D, 4x4c:A, 4x4c:B, 4x4c:C, 4x4c:D, 4x4d:A, 4x4d:B, 4x4d:C, 4x4d:D, 4x4e:A, 4x4e:B, 4x4e:C, 4x4e:D, 4x4f:A, 4x4f:B, 4x4f:C, 4x4f:D, 4x4g:A, 4x4g:B, 4x4g:C, 4x4g:D, 4x4h:A, 4x4h:B, 4x4h:C, 4x4h:D, 4x4i:A, 4x4i:B, 4x4i:C, 4x4i:D
2 1b0n:A 103 52 0.2933 0.2136 0.4231 1.47e-04 3zkc:A, 3zkc:B
3 3kxa:A 131 50 0.2267 0.1298 0.3400 3.10e-04 3kxa:B, 3kxa:C, 3kxa:D
4 4ryk:A 295 58 0.2800 0.0712 0.3621 0.001
5 1y9q:A 178 62 0.2400 0.1011 0.2903 0.004
6 2qfc:A 284 60 0.2533 0.0669 0.3167 0.090 2qfc:B, 3u3w:A, 3u3w:B
7 2xiu:A 66 46 0.2400 0.2727 0.3913 0.30
8 7o81:AU 110 24 0.1733 0.1182 0.5417 0.81 6zvh:i
9 6rtg:A 503 69 0.2933 0.0437 0.3188 1.2
10 4ij6:A 207 53 0.2000 0.0725 0.2830 2.4 4ij6:B
11 7nrd:Sh 120 38 0.1867 0.1167 0.3684 3.5 6zvi:T
12 1v9l:A 418 35 0.1600 0.0287 0.3429 5.4 1v9l:B, 1v9l:C, 1v9l:D, 1v9l:E, 1v9l:F
13 1pvw:A 219 65 0.2533 0.0868 0.2923 6.7 1pvw:B, 1pvy:A, 1pvy:B, 1snn:A, 1snn:B
14 8jk3:B 267 73 0.2267 0.0637 0.2329 9.3 5eph:A, 5eph:B, 5eph:C, 5eph:D, 5eua:A, 5eua:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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