Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SEYAFRMSRLSARLFGEVTRPTNSKSMKVVKLFSELPLAKKKETYDWYPNHHTYAELMQTLRFLGLYRDEHQDFMDEQKR
LKKLRGK

The query sequence (length=87) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8any:AZ 100 87 1.0000 0.8700 1.0000 1.99e-61 7a5f:Z6, 7a5g:Z6, 7a5i:Z6, 7a5k:Z6, 8cst:Z, 8csu:Z, 3j9m:AZ, 8k2a:Si, 7l08:AZ, 6nu2:AZ, 6nu3:AZ, 7og4:AZ, 8oir:AZ, 8ois:AZ, 7p2e:Z, 7pnx:Z, 7pny:Z, 7pnz:Z, 7po0:Z, 7po1:Z, 7po2:Z, 7po3:Z, 7qi4:AZ, 7qi5:AZ, 7qi6:AZ, 8qrk:Z, 8qrl:Z, 8qrm:Z, 8qrn:Z, 6rw4:Z, 6rw5:Z, 6vlz:AZ, 6vmi:AZ, 8xt0:Si, 8xt2:Si, 6zm5:AZ, 6zm6:AZ, 6zs9:AZ, 6zsa:AZ, 6zsb:AZ, 6zsc:AZ, 6zsd:AZ, 6zse:AZ, 6zsg:AZ
2 7pnt:Z 101 87 0.8391 0.7228 0.8391 9.59e-50 5aj3:i, 5aj4:Ai, 6gaw:Ai, 6gaz:Ai, 7nqh:Ai, 7nql:Ai, 7nsi:Ai, 7nsj:Ai, 8oin:AZ, 8oip:AZ, 7pnu:Z, 7pnv:Z, 7pnw:Z, 6ydp:Ai, 6ydw:Ai
3 3jd5:i 98 87 0.8276 0.7347 0.8276 4.35e-48 6neq:i, 6nf8:i
4 7o0t:A 354 68 0.2414 0.0593 0.3088 0.12 7o0t:B, 7o0t:C, 7o0t:D
5 7td5:B 373 52 0.1724 0.0402 0.2885 0.68 6c23:L, 6c24:L, 5gsa:A, 5gsa:B, 5h13:A, 5h14:B, 5h14:A, 5h15:A, 5h15:B, 5h17:A, 5h19:A, 5h24:A, 5h24:B, 5h25:A, 5h25:B, 5hyn:B, 5hyn:G, 5hyn:L, 5hyn:R, 3iiw:A, 3iiy:A, 3ij0:A, 3ij1:A, 3ijc:A, 5ij7:E, 5ij7:F, 5ij8:F, 5ij8:E, 3jpx:A, 3jzg:A, 3jzh:A, 5k0m:A, 3k26:A, 3k27:A, 7kxt:A, 7kxt:B, 6lo2:A, 6lo2:B, 5ls6:B, 5ls6:E, 5ls6:H, 5ls6:K, 7msb:A, 7msd:A, 7p3c:A, 7p3c:B, 7p3g:A, 7p3g:B, 7p3j:A, 7p3j:B, 7qjg:B, 7qjg:A, 7qju:A, 7qju:B, 7qk4:A, 2qxv:A, 6sfb:A, 6sfb:B, 6sfc:A, 6sfc:B, 7si4:A, 7si5:A, 8t9g:K, 7td5:G, 5ttw:A, 5ttw:C, 5u5h:A, 5u5k:A, 5u5t:A, 5u5t:B, 5u62:A, 5u62:B, 5u69:A, 5u6d:A, 5u8a:A, 5u8f:A, 6v3x:A, 6v3y:A, 6w7f:A, 6w7g:A, 5wuk:A, 4x3e:A, 6yvi:A, 6yvi:B, 6yvj:A, 6yvj:B
6 1v7v:A 779 22 0.1494 0.0167 0.5909 1.1 1v7w:A, 1v7x:A
7 7vw7:B 593 67 0.2069 0.0304 0.2687 2.8 7coq:C, 7dqd:B, 7dqd:C, 7dqd:J, 7dqd:K, 7dqe:A, 7dqe:B, 7dqe:C, 8igv:A, 8igv:B, 8igv:C, 8igw:A, 8igw:B, 8igw:C, 8igw:G, 8igw:H, 8igw:I, 5knb:B, 5knb:C, 5knc:A, 5knc:B, 5knc:C, 3vr3:B, 3vr3:C, 3vr6:B, 3vr6:C, 7vw7:C, 5ze9:A, 5ze9:B, 5ze9:C
8 7nha:B 735 86 0.2874 0.0340 0.2907 3.1 8bek:B, 7nhx:B, 7nik:B, 7nil:B, 7nir:B, 7nis:B, 7nj3:B, 7nj4:B, 7nj5:B, 7nj7:B, 7nk1:B, 7nk2:B, 7nk4:B, 7nk6:B, 7nk8:B, 7nka:B, 7nkc:B, 7nki:B, 7nkr:B, 8pm0:B, 8pnp:B, 8poh:F, 7qtl:B, 6qx3:B, 6qx8:B, 6qx8:F, 6qxe:B, 6qxe:F, 7r0e:B, 8r60:B, 8r65:B, 7z4o:EEE, 7z4o:BBB, 7zpl:B, 7zpl:E
9 7nhc:B 717 86 0.2874 0.0349 0.2907 3.1 8rmr:B, 8rms:B
10 8h69:B 754 86 0.2759 0.0318 0.2791 4.5 7ni0:B, 8pnq:B, 8r3k:B, 8r3l:B, 6rr7:B
11 8rmq:B 694 86 0.2759 0.0346 0.2791 4.9 6tu5:BBB, 6tu5:EEE
12 4min:A 339 28 0.1264 0.0324 0.3929 5.4 4min:B, 4min:C, 4min:D, 4mio:A, 4mio:B, 4mio:C, 4mio:D, 4miy:A, 4miy:B, 4miy:C, 4miy:D, 4mjl:A, 4mjl:B, 4mjl:C, 4mjl:D
13 6sga:Fb 129 19 0.1034 0.0698 0.4737 6.0 7pua:Fb, 6sgb:Fb
14 3b98:A 446 34 0.1494 0.0291 0.3824 6.8 3b98:B, 3b99:A
15 2qlw:B 108 21 0.1034 0.0833 0.4286 6.8 2qlx:A, 2qlx:B
16 4e6m:A 401 58 0.1609 0.0349 0.2414 7.1 4e6m:B, 4e6m:C, 4e6m:D, 4e6m:E, 4e6m:F, 4e6m:G, 4e6m:H, 2gl5:A, 2gl5:B
17 3b99:B 415 34 0.1494 0.0313 0.3824 7.7
18 8jj9:B 299 47 0.1724 0.0502 0.3191 8.4 8jj9:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417