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BioLiP
>protein
SEISPEQRTAFEAAVFRRLLEHLRERSDVQNIDLMNLAGFCRNCLSNWYREAAEASGVPMSKEESREIVYGMPYEEWRT

The query sequence (length=79) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2o35:B 95 79 1.0000 0.8316 1.0000 2.86e-55 2o35:A
2 3fyb:B 88 79 0.5443 0.4886 0.5443 1.40e-27
3 8epz:A 569 53 0.2152 0.0299 0.3208 0.19 8ej0:A, 8ej0:C, 8ej0:E, 8ej0:G, 8epz:B
4 8cqt:B 164 38 0.1519 0.0732 0.3158 0.29 8cqt:A
5 3s4a:A 822 36 0.1519 0.0146 0.3333 1.2 3s4a:B, 3s4b:A, 3s4b:B, 3s4d:A
6 3wt0:D 378 37 0.1392 0.0291 0.2973 1.3 3wqt:A, 3wqt:C, 3wqt:D, 3wqu:A, 3wqu:B, 3wqu:C, 3wqu:D, 3wt0:A, 3wt0:B, 3wt0:C
7 4zjl:A 1044 54 0.2025 0.0153 0.2963 1.8 3aob:C, 3aoc:C, 3aod:A, 3aod:C, 9bfh:A, 9bfm:A, 9bfn:A, 9bft:A, 2dr6:A, 2drd:A, 4dx5:B, 4dx7:A, 4dx7:B, 8ffs:A, 5jmn:A, 5jmn:B, 5jmn:C, 5nc5:B, 5ng5:K, 5ng5:L, 5ng5:J, 7ouk:A, 7ouk:B, 7ouk:C, 7oul:A, 7oul:C, 7oum:A, 7oum:B, 7oum:C, 8p1i:A, 8p1i:B, 6q4n:A, 6q4n:B, 6q4n:C, 6q4o:B, 2rdd:A, 1t9u:A, 1t9v:A, 1t9w:A, 1t9x:A, 1t9y:A, 4u8v:B, 4u8y:B, 4u95:B, 2w1b:A, 3w9h:B, 4zjl:D, 4zjo:A, 4zjo:D, 4zjq:A, 4zjq:D, 6zo5:B, 6zo5:C, 6zo6:B, 6zo6:C, 6zo7:A, 6zo7:B, 6zo8:B, 6zo8:C, 6zo9:B, 6zob:A, 6zoc:A, 6zoc:B, 6zod:A, 6zod:B, 6zof:B, 6zog:B, 6zoh:A, 6zoh:B, 6zoh:C
8 6jiy:A 3521 56 0.2152 0.0048 0.3036 2.0 6ji8:A, 6ji8:D, 6ji8:G, 6ji8:J, 6jii:B, 6jii:E, 6jii:H, 6jii:K, 6jiu:A, 6jiu:D, 6jiu:G, 6jiu:J, 6jiy:D, 6jiy:G, 6jiy:J, 6jv2:A, 6jv2:C, 6jv2:E, 6jv2:G
9 7b8s:C 589 54 0.2025 0.0272 0.2963 2.2 7b8r:C, 7b8t:C, 5eno:C, 5enp:C, 5enq:C, 5enr:C, 5ens:C, 5ent:C
10 9bhw:B 299 33 0.1392 0.0368 0.3333 3.6 9bhw:C
11 3acs:A 822 31 0.1392 0.0134 0.3548 5.2 3acs:B, 3act:A, 3act:B, 3afj:A, 3afj:B, 2cqs:A, 2cqs:B, 2cqt:A, 2cqt:B, 3qfy:A, 3qfy:B, 3qfz:A, 3qfz:B, 3qg0:A, 3qg0:B
12 6nj8:B 277 41 0.1266 0.0361 0.2439 8.5 6nj8:C, 6nj8:D
13 8cdb:A 306 39 0.1772 0.0458 0.3590 9.4 8cd8:A, 8cd8:C, 8cdb:B, 8cdb:C, 8cdb:D, 8cdb:E, 8cdb:F, 8cdb:G, 8cdb:H, 8cdb:I, 8cdb:J, 8cdb:K, 8cdb:L, 8cdb:M, 8cdb:N, 2cki:A, 2cki:B, 2j83:A, 2j83:B, 3lum:A, 3lum:B, 3lum:C, 3lum:D, 3lun:A, 3lun:B
14 3ddd:A 281 27 0.1519 0.0427 0.4444 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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