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BioLiP
>protein
SEGNGPAAVHYQPASPPRDACVYSSCYCEENVWKLCEYIKNHDQYPLEECYAVFISNERKMIPIWKQQARPGDGPVIWDY
HVVLLHVSSGGQSFIYDLDTVLPFPCLFDTYVEDAIKSDDDIHPQFRRKFRVICADSYLKNFASDRSHMKDSSGNWREPP
PPYPCIETGDSKMNLNDFISMDPKVGWGAVYTLSEFTHRFGS

The query sequence (length=202) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4w79:A 202 202 1.0000 1.0000 1.0000 5.58e-154 3c9q:A
2 6uts:A 229 81 0.0990 0.0873 0.2469 2.7
3 4wh3:A 356 27 0.0545 0.0309 0.4074 2.8 4ock:A, 4oco:A, 4ocp:A, 4ocv:A, 4wh2:A
4 1dqn:A 230 136 0.1584 0.1391 0.2353 2.8 1dqn:B, 1dqp:A, 1dqp:B
5 8avk:A 202 54 0.0792 0.0792 0.2963 4.1 8avk:B, 8avn:A, 8avn:B
6 7a57:B 449 72 0.0941 0.0423 0.2639 8.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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