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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SEFLTVRLSSEQYSPIPWLVWSSSQQEVIASGELSDWQQLDDLKNYAEQRPIVVLVAASDVVLTEVDIPPGASRQFESML
PYLLEDEIAQDVDDLHFSVLAKENGKAQVCGVDRRWLQHMLDAFRAQGLDVKRVLPDSLALPLDDEGISAAQLGEQWLFR
HSACQGSAVDDSWMPVYLNPLSVACFSSLPEQQAHWLSRPVEMTMALLSQGVADGKFSLLTGEFKP

The query sequence (length=226) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4pht:Y 226 226 1.0000 1.0000 1.0000 4.41e-166 4pht:X, 4pht:Z
2 4fdt:A 398 87 0.1150 0.0653 0.2989 0.22 4fdt:B, 4fdu:A, 4fdu:B
3 3c4a:A 365 68 0.0929 0.0575 0.3088 2.0
4 3aov:A 404 51 0.0708 0.0396 0.3137 3.0 3aov:C, 3aow:A, 3aow:C, 3ath:A, 3ath:C, 3av7:A, 3av7:C, 3wx9:A, 3wx9:C
5 8ciw:A 555 79 0.0973 0.0396 0.2785 3.2 8ciw:B
6 8xho:A 262 47 0.0708 0.0611 0.3404 3.6 8xho:B
7 3was:A 389 41 0.0531 0.0308 0.2927 4.3 4kmi:A, 4kmi:B, 3was:B, 3wat:A, 3wat:B, 3wau:A, 3wau:B
8 2j8m:A 171 99 0.1195 0.1579 0.2727 5.4 2bl1:A, 2j8m:B, 2j8r:A, 2j8r:B
9 4emy:A 409 76 0.0885 0.0489 0.2632 7.5 4emy:B, 4emy:C, 4emy:D
10 4q94:A 129 47 0.0619 0.1085 0.2979 7.5 9b9l:A, 4q94:B, 4q96:A, 4q96:B, 4q96:D, 4q96:E
11 2iew:A 258 59 0.0841 0.0736 0.3220 9.2 2if8:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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