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BioLiP Library
>protein
SDNWMGRAKEIGNGGWDQFQFLFFDPNGYLYAVSNDKLYKASPPQSDTDNWIARATEIGSGGWSGFKFLFFHPNGYLYAV
RGQRFYKALPPV

The query sequence (length=92) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3kif:I 94 92 1.0000 0.9787 1.0000 3.63e-65 3kif:A, 3kif:B, 3kif:C, 3kif:D, 3kif:E, 3kif:F, 3kif:G, 3kif:J
2 3kif:I 94 45 0.3261 0.3191 0.6667 1.30e-16 3kif:A, 3kif:B, 3kif:C, 3kif:D, 3kif:E, 3kif:F, 3kif:G, 3kif:J
3 3kif:I 94 46 0.3261 0.3191 0.6522 5.90e-16 3kif:A, 3kif:B, 3kif:C, 3kif:D, 3kif:E, 3kif:F, 3kif:G, 3kif:J
4 3kih:B 95 62 0.5978 0.5789 0.8871 5.87e-36 3kih:A, 3kih:C, 3kih:D
5 3kih:B 95 77 0.5109 0.4947 0.6104 8.45e-31 3kih:A, 3kih:C, 3kih:D
6 8r3b:A 47 45 0.3478 0.6809 0.7111 1.05e-18 8r3c:A, 8r3c:B, 8r3c:E
7 8r3b:A 47 29 0.1848 0.3617 0.5862 3.57e-06 8r3c:A, 8r3c:B, 8r3c:E
8 8r3b:A 47 15 0.1196 0.2340 0.7333 0.085 8r3c:A, 8r3c:B, 8r3c:E
9 7vef:A 828 52 0.1957 0.0217 0.3462 3.0 8in9:A
10 8cff:A 823 80 0.2283 0.0255 0.2625 3.1 8cff:C, 8cff:E, 8cff:G, 8cgs:A, 8cgs:C, 8cgs:E, 8cgs:G, 8ch9:A, 8ch9:C, 8ch9:E, 8ch9:G, 1g8j:A, 1g8j:C, 1g8k:A, 1g8k:C, 1g8k:E, 1g8k:G
11 7t4g:A 493 65 0.1848 0.0345 0.2615 3.5 7t4g:C, 7t4g:E
12 4jay:A 338 49 0.1739 0.0473 0.3265 4.5 4jay:B, 4jay:C, 4jay:D, 4jb1:A, 7or2:A, 7orz:A, 7osq:A
13 6tyb:G 345 65 0.1848 0.0493 0.2615 5.9 3fus:A
14 2bo0:A 336 38 0.1304 0.0357 0.3158 7.9 5b1j:A, 5b1j:B, 5b1k:A, 2bp0:A, 2bp0:B, 2bp8:A, 2bp8:B, 1bq5:A, 4csp:A, 4csp:F, 4csz:A, 1gs6:X, 1gs7:A, 1gs8:A, 1hau:A, 1haw:A, 2jfc:A, 2jfc:B, 2jfc:C, 2jfc:D, 2jfc:E, 2jfc:F, 1ndt:A, 1oe1:A, 1oe2:A, 1oe3:A, 5onx:A, 5ony:A, 2vm3:A, 2vm4:A, 2vmj:A, 2vn3:A, 2vw4:A, 2vw4:B, 2vw6:A, 2vw6:B, 2vw7:A, 2vw7:B, 1wa0:X, 1wa1:X, 1wa2:X, 1wae:A, 2xwz:A, 2xwz:E, 2xwz:D, 2xwz:B, 2xwz:F, 2xwz:C, 2xx0:A, 2xx0:B, 2xx1:A, 2xx1:D, 2xx1:B, 2xx1:C, 2xx1:E, 2xx1:F, 2xxf:A, 2xxf:B, 2xxg:A, 2xxg:C, 2zon:A, 2zon:B, 2zon:C
15 8tv5:C 294 38 0.1413 0.0442 0.3421 8.2 6b9l:A, 6b9l:B, 6b9l:C, 6b9l:D, 6njz:A, 6njz:B, 6nk0:A, 6nk0:B, 6nk1:A, 6nk1:B, 6nk2:A, 6nk2:B, 6nkp:A, 6nkp:B, 6rw2:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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