Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

I-TASSER D-I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK D-QUARK DRfold DRfold2 LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred TCRfinder

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA DeepMSA2 FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP Library
>protein
SDLPAGWMRVQDTSGTYYWHIPTGTTQWEPPGR

The query sequence (length=33) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2oei:A 37 33 1.0000 0.8919 1.0000 2.12e-19 2ho2:A
2 4lcd:A 419 30 0.3939 0.0310 0.4333 0.026 4lcd:B
3 5dws:C 40 30 0.3939 0.3250 0.4333 0.29
4 5cq2:A 76 30 0.3939 0.1711 0.4333 0.45 5dws:A, 5dws:E, 5dws:G, 5dzd:A, 5dzd:B, 2jo9:A, 4rof:A, 4rof:B
5 8sg2:A 163 31 0.4242 0.0859 0.4516 0.51 6dun:A, 6dun:B, 7efj:A, 7efx:A, 7ekv:A, 7f0m:A, 7f0m:C, 7f0m:B, 7f0m:D, 1f8a:B, 4gwv:A, 3i6c:A, 3i6c:B, 1i8g:B, 1i8h:B, 3ikd:A, 3ikd:B, 3ikg:A, 3ikg:B, 9inr:A, 9inr:B, 2itk:A, 3jyj:A, 3jyj:B, 3kab:A, 3kac:A, 3kac:B, 3kad:A, 3kaf:A, 3kag:A, 3kah:A, 3kai:A, 3kce:A, 2lb3:A, 2n1o:A, 1nmw:A, 3ntp:A, 6o33:A, 6o34:A, 3odk:A, 3oob:A, 1pin:A, 2q5a:A, 3tc5:A, 3tcz:A, 3tdb:A, 4tns:A, 4tyo:A, 4tyo:B, 5uy9:A, 6vaj:A, 3wh0:A, 2xp3:A, 2xp4:A, 2xp5:A, 2xp6:A, 2xp7:A, 2xp8:A, 2xp9:A, 2xpa:A, 2xpb:A
6 6jjz:B 96 32 0.3939 0.1354 0.4062 0.66 6jjz:A, 6kkg:A, 6kkg:B
7 4o33:A 417 46 0.4242 0.0336 0.3043 0.68 4axx:A, 3c3a:B, 3c3b:A, 3c3b:B, 3c3c:A, 1hdi:A, 1kf0:A, 5m1r:A, 5m3u:A, 5m6z:A, 5mxm:A, 5np8:A, 4o3f:A, 5o7d:A, 1vjc:A, 1vjd:A, 2wzb:A, 2wzc:A, 2wzd:A, 2x13:A, 2x14:A, 2x15:A, 2xe7:A, 2xe8:A, 2y3i:A, 2y3i:D, 2ybe:A, 2zgv:A, 3zoz:A
8 2nc3:A 33 31 0.3636 0.3636 0.3871 0.95 2nc4:A, 2nc5:A, 2nc6:A
9 2laj:A 40 32 0.3939 0.3250 0.4062 1.3
10 1jmq:A 46 33 0.4242 0.3043 0.4242 1.4 1k5r:A, 1k9q:A, 1k9r:A, 2lax:A, 2lay:A, 2ltw:A
11 7lp2:E 37 30 0.3939 0.3514 0.4333 1.7 2lb2:A, 7lp2:A, 7lp2:C, 2lty:A
12 7lp3:A 37 31 0.4242 0.3784 0.4516 2.3 7lp3:C
13 4d9n:A 391 22 0.3333 0.0281 0.5000 3.3 4d9m:A, 4d9m:B, 4d9n:B
14 5xnp:A 361 18 0.2424 0.0222 0.4444 3.6 5xnp:B, 5xnq:A
15 4d9k:A 366 22 0.3333 0.0301 0.5000 4.3 4d9k:B, 4d9k:C
16 2kxq:A 90 31 0.3333 0.1222 0.3548 5.1 2laz:A, 2lb0:A, 2ltz:A
17 3vnl:A 291 21 0.2727 0.0309 0.4286 6.3 7e9w:A, 7e9w:B, 7e9w:C, 7e9w:D, 3vni:A, 3vni:B, 3vni:C, 3vni:D, 3vnj:A, 3vnj:B, 3vnj:C, 3vnj:D, 3vnk:A, 3vnk:B, 3vnk:C, 3vnk:D, 3vnl:B, 3vnl:C, 3vnl:D, 3vnm:A, 3vnm:B, 3vnm:C, 3vnm:D
18 7mvz:A 1641 30 0.2727 0.0055 0.3000 6.8 7tbi:F1, 7tbi:F2, 7tbj:F1, 7tbj:F2, 7tbk:F1, 7tbk:F2, 7tbl:F1, 7tbl:F2, 7tbm:F1, 7tbm:F2
19 5izk:B 451 24 0.2727 0.0200 0.3750 7.2
20 5ygr:D 388 18 0.3030 0.0258 0.5556 8.2 5ygr:A, 5ygr:C
21 5ygr:B 365 18 0.3030 0.0274 0.5556 9.0
22 3zx1:A 471 10 0.1818 0.0127 0.6000 9.0

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417