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BioLiP
>protein
SDKPKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAMKDKSEWEAKAAKAKDDYDRAVKEFEANG

The query sequence (length=73) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1e7j:A 74 73 0.9863 0.9730 0.9863 4.14e-47 3nm9:D, 3nm9:G, 3nm9:J, 3nm9:P, 3nm9:M, 3nm9:A, 1qrv:A, 1qrv:B, 8r1x:A
2 1j5n:A 93 62 0.3562 0.2796 0.4194 2.68e-09
3 5jh0:D 157 69 0.3425 0.1592 0.3623 7.32e-09 5jgh:A, 5jgh:D, 5jgh:G, 5jgh:J, 5jh0:A
4 5jh0:D 157 68 0.1918 0.0892 0.2059 3.0 5jgh:A, 5jgh:D, 5jgh:G, 5jgh:J, 5jh0:A
5 6cij:N 133 39 0.2603 0.1429 0.4872 5.29e-08 5zdz:N, 5ze1:N, 5ze2:N
6 6cij:N 133 68 0.3288 0.1805 0.3529 1.67e-05 5zdz:N, 5ze1:N, 5ze2:N
7 2gzk:A 159 70 0.4110 0.1887 0.4286 6.81e-08 9bvd:C, 9bvd:F, 9bvd:I, 6cil:N, 6edb:B, 1hry:A, 1hrz:A, 1j46:A, 1j47:A, 6oem:N, 6oem:H, 6oen:N, 6oen:H, 6oeo:N, 6oer:H
8 2gzk:A 159 51 0.2055 0.0943 0.2941 2.46e-05 9bvd:C, 9bvd:F, 9bvd:I, 6cil:N, 6edb:B, 1hry:A, 1hrz:A, 1j46:A, 1j47:A, 6oem:N, 6oem:H, 6oen:N, 6oen:H, 6oeo:N, 6oer:H
9 6cik:N 90 62 0.3562 0.2889 0.4194 3.78e-07 6cg0:N, 6cim:N
10 4qr9:A 75 71 0.3014 0.2933 0.3099 1.57e-06 4qr9:B
11 1gt0:D 79 46 0.2055 0.1899 0.3261 2.37e-05 8bx1:E, 8bx2:E, 6ht5:D, 1o4x:B, 6t90:L, 6yov:L
12 6t78:A 77 43 0.2055 0.1948 0.3488 4.04e-05 6t78:B, 3u2b:C
13 4s2q:D 76 43 0.1918 0.1842 0.3256 8.43e-05 4euw:A
14 6l6y:D 80 45 0.1644 0.1500 0.2667 0.001 4a3n:A, 3f27:D, 6l6y:F
15 6hb4:A 197 44 0.2055 0.0761 0.3409 0.003 6erp:C, 6erp:G, 6erq:C, 6erq:G, 6hb4:D, 6hb4:G, 6hb4:J, 6hc3:A, 6hc3:D, 6hc3:G, 6hc3:J, 7lbw:A, 7lbw:B, 7lbx:A, 7lbx:B, 4nnu:A, 4nnu:B, 4nod:A, 4nod:B, 4nod:G, 4nod:H, 3tmm:A, 3tq6:A, 3tq6:B
16 6hb4:A 197 69 0.3151 0.1168 0.3333 0.64 6erp:C, 6erp:G, 6erq:C, 6erq:G, 6hb4:D, 6hb4:G, 6hb4:J, 6hc3:A, 6hc3:D, 6hc3:G, 6hc3:J, 7lbw:A, 7lbw:B, 7lbx:A, 7lbx:B, 4nnu:A, 4nnu:B, 4nod:A, 4nod:B, 4nod:G, 4nod:H, 3tmm:A, 3tq6:A, 3tq6:B
17 5ze0:N 118 60 0.3425 0.2119 0.4167 0.005 1ckt:A
18 4y60:C 76 41 0.1370 0.1316 0.2439 0.069
19 7m5w:A 138 66 0.2329 0.1232 0.2576 0.099 6jrp:A, 6jrp:D, 6jrp:G, 6jrp:J
20 4bmv:C 258 38 0.1781 0.0504 0.3421 1.9 4bmv:A, 4bmv:B, 4bmv:D, 4bmv:E, 4bmv:F, 4bmv:G, 4bmv:H, 4bmv:I, 4bmv:J
21 8q7x:A 1914 59 0.2192 0.0084 0.2712 5.1
22 4dpu:A 330 46 0.2055 0.0455 0.3261 5.4 4dpt:B, 4dpu:B, 4dpw:A, 4dpw:B, 4dpw:C, 4dpw:D, 4dpw:E, 4dpw:F, 4dpw:G, 4dpw:H, 4dpy:A, 4dpy:B, 4du7:A, 4du7:B, 4du8:A, 4du8:B, 3qt6:A, 3qt6:B, 3qt7:A, 3qt7:B, 3qt8:A, 3qt8:B
23 2vdv:E 216 41 0.1918 0.0648 0.3415 5.8 2vdv:F
24 2asu:B 225 30 0.1233 0.0400 0.3000 8.1
25 2fws:A 139 39 0.1644 0.0863 0.3077 8.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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