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BioLiP
>protein
SDKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQK
VKKTAEAG

The query sequence (length=88) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2dmj:A 106 88 1.0000 0.8302 1.0000 1.87e-63
2 2n8a:A 214 88 1.0000 0.4112 1.0000 1.16e-62 4av1:D, 4av1:B, 2l30:A, 2l31:A, 3od8:D, 3od8:F, 3oda:D, 3oda:F, 3odc:A, 3odc:B, 3ode:A, 3ode:B, 7s81:N, 7s81:A
3 2n8a:A 214 85 0.3295 0.1355 0.3412 8.61e-09 4av1:D, 4av1:B, 2l30:A, 2l31:A, 3od8:D, 3od8:F, 3oda:D, 3oda:F, 3odc:A, 3odc:B, 3ode:A, 3ode:B, 7s81:N, 7s81:A
4 8g0h:C 227 88 0.9886 0.3833 0.9886 1.59e-61 4av1:A, 4av1:C, 4dqy:D, 4dqy:A, 4dqy:B, 4dqy:E, 8g0h:A, 2jvn:A, 3od8:A, 3od8:B, 3od8:C, 3od8:E, 3od8:G, 3od8:H, 3oda:A, 3oda:B, 3oda:C, 3oda:E, 3oda:G, 3oda:H, 4opx:D, 4opx:A, 4oqa:D, 4oqa:A, 4oqb:D, 4oqb:A, 2riq:A, 7s68:A, 7s6h:C, 7s6h:A, 7s6m:A, 7s6m:C, 7s81:I, 7s81:F, 7s81:G, 7s81:O, 7s81:J, 7s81:B
5 1v9x:A 114 86 0.4659 0.3596 0.4767 4.56e-23
6 2cs2:A 134 85 0.3295 0.2164 0.3412 1.48e-09
7 1uw0:A 117 80 0.2841 0.2137 0.3125 2.22e-09
8 8ova:A1 262 76 0.2273 0.0763 0.2632 0.27 8ove:A1, 4v8m:A1
9 3pih:A 836 24 0.1136 0.0120 0.4167 2.0
10 2yes:B 186 57 0.1932 0.0914 0.2982 2.8 2yes:A
11 6s32:D 352 20 0.1250 0.0312 0.5500 3.8 6s32:A, 6s32:B, 6s32:C
12 7jx0:A 801 28 0.1136 0.0125 0.3571 4.9 3qjz:A
13 3zw3:A 831 28 0.1136 0.0120 0.3571 5.0 2a4z:A, 4fhj:A, 4fhk:A, 6fh5:A, 6gq7:A, 4hvb:A, 5jha:A, 5jhb:A, 7jwe:A, 4kzc:A, 3lj3:A, 3mjw:A, 3nzu:A, 3p2b:A, 3qk0:A, 3sd5:A, 5t23:A, 6t3b:A, 6t3c:A, 4wwo:A, 4wwp:A, 6xrm:A, 6xrn:A, 3zvv:A
14 7d5i:A 443 18 0.0682 0.0135 0.3333 6.6
15 4yuu:C1 449 36 0.1705 0.0334 0.4167 6.9 4yuu:c1, 4yuu:C2, 4yuu:c2
16 8w0a:C 636 20 0.1023 0.0142 0.4500 8.0 8w0a:A
17 9asj:A 741 20 0.1023 0.0121 0.4500 8.0 9asj:B, 9bp9:A, 9bp9:C, 9bpa:A, 9bpa:C, 9bpa:E, 9bpa:G
18 9bha:A 793 20 0.1023 0.0113 0.4500 8.0 5a9f:A, 5aga:A, 9bh8:A, 9bh8:B, 9bh9:A, 9bh9:B, 9bha:B, 9c5q:C, 9c5q:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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