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BioLiP
>protein
SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDGSA

The query sequence (length=46) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6r2w:L 143 43 0.9348 0.3007 1.0000 3.37e-26 2a2q:L, 2aei:L, 2aer:L, 2b8o:L, 2c4f:L, 8cn9:D, 8cn9:I, 8cn9:S, 1dan:L, 1dva:L, 1dva:M, 2ec9:L, 3ela:L, 1fak:L, 1ff7:A, 1ffm:A, 2fir:L, 4ibl:L, 1j9c:L, 5l0s:B, 5par:A, 2puq:L, 1qfk:L, 3th2:L, 3th3:L, 3th4:L, 1w0y:L, 1w2k:L, 1wqv:L, 1wss:L, 1wtg:L, 1wun:L, 1wv7:L, 4ylq:L, 1z6j:L, 4z6a:L, 4zma:L, 2zp0:L, 2zwl:L, 2zzu:L
2 5ky2:B 40 40 0.6522 0.7500 0.7500 8.82e-18 5ky3:B
3 5vyg:B 43 38 0.5435 0.5814 0.6579 1.22e-12 5vyg:A, 5vyg:C
4 8eph:A 91 37 0.5435 0.2747 0.6757 5.45e-12 1edm:B, 1edm:C, 8eph:C
5 5l0t:B 40 37 0.4783 0.5500 0.5946 4.09e-11 5ky7:B, 5l0u:B, 5l0v:B
6 1xkb:A 91 35 0.5000 0.2527 0.6571 2.32e-10 3k9x:A
7 4d0f:A 125 42 0.3913 0.1440 0.4286 1.03e-08 4cud:A, 4cue:A, 4cuf:A, 4d0e:A, 5ub5:B, 2vj3:A, 4xlw:A
8 4d0f:A 125 36 0.3261 0.1200 0.4167 6.42e-04 4cud:A, 4cue:A, 4cuf:A, 4d0e:A, 5ub5:B, 2vj3:A, 4xlw:A
9 4d0f:A 125 40 0.3261 0.1200 0.3750 0.020 4cud:A, 4cue:A, 4cuf:A, 4d0e:A, 5ub5:B, 2vj3:A, 4xlw:A
10 4xlw:C 118 42 0.3913 0.1525 0.4286 3.60e-08 5ky8:B, 5l0r:B, 4xl1:A, 4xl1:D, 4xlw:E, 4xlw:G
11 4xlw:C 118 38 0.3261 0.1271 0.3947 1.14e-04 5ky8:B, 5l0r:B, 4xl1:A, 4xl1:D, 4xlw:E, 4xlw:G
12 4xlw:C 118 42 0.3261 0.1271 0.3571 0.020 5ky8:B, 5l0r:B, 4xl1:A, 4xl1:D, 4xlw:E, 4xlw:G
13 3h5c:B 312 38 0.3913 0.0577 0.4737 3.27e-07
14 5uk5:A 194 40 0.3696 0.0876 0.4250 7.80e-07 2rqz:A, 2rr2:A
15 5uk5:A 194 44 0.3478 0.0825 0.3636 0.012 2rqz:A, 2rr2:A
16 5uk5:A 194 39 0.3043 0.0722 0.3590 0.014 2rqz:A, 2rr2:A
17 5uk5:A 194 60 0.4130 0.0979 0.3167 0.092 2rqz:A, 2rr2:A
18 5mwb:A 118 42 0.3478 0.1356 0.3810 7.88e-07
19 5mwb:A 118 36 0.3043 0.1186 0.3889 2.34e-04
20 5mwb:A 118 41 0.3261 0.1271 0.3659 0.13
21 4xbm:B 401 35 0.4348 0.0499 0.5714 1.13e-06
22 4xbm:B 401 35 0.3261 0.0374 0.4286 0.016
23 4xbm:B 401 25 0.2826 0.0324 0.5200 0.035
24 4xbm:B 401 38 0.3696 0.0424 0.4474 0.052
25 7alj:A 115 40 0.3913 0.1565 0.4500 2.01e-06
26 7alj:A 115 39 0.3261 0.1304 0.3846 3.84e-04
27 7alj:A 115 35 0.3043 0.1217 0.4000 0.078
28 5fm9:A 154 39 0.4348 0.1299 0.5128 2.42e-06 5fma:A, 5fma:B
29 5fm9:A 154 35 0.4130 0.1234 0.5429 4.90e-06 5fma:A, 5fma:B
30 5fm9:A 154 34 0.3043 0.0909 0.4118 0.004 5fma:A, 5fma:B
31 5fm9:A 154 39 0.3261 0.0974 0.3846 0.009 5fma:A, 5fma:B
32 4d90:A 127 35 0.3478 0.1260 0.4571 7.47e-05 4d90:B
33 4d90:A 127 45 0.3043 0.1102 0.3111 0.068 4d90:B
34 4d90:A 127 34 0.3043 0.1102 0.4118 3.3 4d90:B
35 4rs0:A 557 39 0.3478 0.0287 0.4103 0.001 6bl3:A, 6bl3:B, 6bl3:C, 6bl3:D, 6bl4:A, 6bl4:B, 6bl4:C, 6bl4:D, 4cox:A, 4cox:B, 4cox:C, 4cox:D, 5cox:A, 5cox:B, 5cox:C, 5cox:D, 6cox:A, 6cox:B, 1cvu:B, 1cvu:A, 1cx2:A, 1cx2:B, 1cx2:C, 1cx2:D, 1ddx:A, 1ddx:B, 1ddx:C, 1ddx:D, 4e1g:A, 4e1g:B, 8et0:A, 8et0:B, 5fdq:A, 5fdq:B, 4fm5:A, 4fm5:B, 4fm5:C, 4fm5:D, 3hs5:A, 3hs5:B, 3hs6:A, 3hs6:B, 3hs7:A, 3hs7:B, 5jvy:A, 5jvy:B, 5jvz:A, 5jvz:B, 5jw1:A, 5jw1:B, 3krk:A, 3krk:B, 3ln0:A, 3ln0:B, 3ln0:C, 3ln0:D, 3ln1:A, 3ln1:B, 3ln1:C, 3ln1:D, 4m10:A, 4m10:B, 4m10:C, 4m10:D, 4m11:A, 4m11:B, 4m11:C, 4m11:D, 3mdl:A, 3mdl:B, 3mqe:A, 3mqe:B, 3mqe:C, 3mqe:D, 3nt1:A, 3nt1:B, 3ntb:A, 3ntb:B, 3ntb:C, 3ntb:D, 3ntg:A, 3ntg:B, 3ntg:C, 3ntg:D, 6ofy:A, 6ofy:B, 3olt:A, 3olt:B, 3olu:A, 3olu:B, 4otj:A, 4otj:B, 4otj:C, 4otj:D, 4oty:A, 4oty:B, 3pgh:A, 3pgh:B, 3pgh:C, 3pgh:D, 4ph9:A, 4ph9:B, 1pxx:A, 1pxx:B, 1pxx:C, 1pxx:D, 3q7d:A, 3q7d:B, 3qh0:A, 3qh0:B, 3qmo:A, 3qmo:B, 3rr3:A, 3rr3:B, 3rr3:C, 3rr3:D, 4rrw:A, 4rrw:B, 4rrw:C, 4rrw:D, 4rrx:A, 4rrx:B, 4rrz:A, 4rrz:B, 4rrz:C, 4rrz:D, 4rut:A, 4rut:B, 4rut:C, 4rut:D, 3tzi:A, 3tzi:B, 6v3r:A, 6v3r:B, 6v3r:C, 6v3r:D, 5w58:A, 4z0l:A, 4z0l:B, 4z0l:C, 4z0l:D
36 1g1q:A 160 38 0.3043 0.0875 0.3684 0.002 1g1q:B, 1g1q:C, 1g1q:D, 1g1r:A, 1g1r:B, 1g1r:D, 1g1r:C, 1g1s:B, 1g1s:A
37 3poy:A 1005 34 0.3261 0.0149 0.4412 0.002 3asi:A, 3b3q:E, 3b3q:F, 3biw:E, 3biw:F, 3biw:G, 3bod:A, 2h0b:A, 2h0b:B, 2h0b:C, 2h0b:D, 2r16:A, 2r1d:H, 2r1d:B, 2r1d:D, 2r1d:I, 3vkf:C, 3vkf:D, 2wqz:C, 2wqz:D, 2xb6:C, 2xb6:D, 5z8y:B, 5z8y:D, 5z8y:F, 5z8y:H
38 5f1a:A 553 36 0.3478 0.0289 0.4444 0.005 5f19:A, 5f19:B, 5f1a:B, 5ikq:A, 5ikq:B, 5ikr:A, 5ikr:B, 5ikt:A, 5ikt:B, 5ikv:A, 5ikv:B, 5kir:A, 5kir:B
39 4c16:A 280 33 0.2609 0.0429 0.3636 0.046 4c16:B, 4csy:A, 4csy:B, 1esl:A, 6eyi:A, 6eyj:A, 6eyj:B, 6eyk:A, 1g1t:A
40 2w86:A 147 28 0.3261 0.1020 0.5357 0.18
41 8em4:A 3818 41 0.2826 0.0034 0.3171 1.1 8em4:B
42 8em7:A 4378 41 0.2826 0.0030 0.3171 1.2 8em7:B, 8jut:A, 8jut:B, 8juu:B, 8juu:A, 8jx8:B, 8jx8:A, 8jx9:B, 8jxa:A, 8jxb:A, 8jxd:A, 8jxe:A, 8jxe:B, 8jxf:B, 8jxg:A, 8jxh:A, 8jxi:B
43 7nyc:C 809 35 0.3043 0.0173 0.4000 1.4 7nyd:C
44 6pog:B 236 35 0.3043 0.0593 0.4000 1.6
45 7sbw:B 1196 23 0.2174 0.0084 0.4348 2.4 6nzk:A, 6nzk:B, 6nzk:C, 7sb3:J, 7sb3:A, 7sb3:B, 7sb4:A, 7sb4:C, 7sb4:B, 7sbv:J, 7sbv:A, 7sbv:B, 7sbw:J, 7sbw:A, 7sbx:J, 7sbx:B, 7sbx:A, 7sby:J, 7sby:A, 7sby:B
46 9iuk:A 1335 24 0.2609 0.0090 0.5000 2.4 9iul:A, 9ium:A
47 2ygq:A 241 28 0.2609 0.0498 0.4286 3.8
48 2ygq:A 241 31 0.2826 0.0539 0.4194 4.6
49 7pfp:A 563 37 0.2609 0.0213 0.3243 4.3 7pfp:C, 7q3n:U
50 5f93:B 426 34 0.3261 0.0352 0.4412 5.1 5f7m:A, 5f7m:B, 5f7n:A, 5f7n:B, 5f7w:A, 5f7w:B, 5f7y:A, 5f7y:B, 5f8r:A, 5f8r:B, 5f93:A, 5f93:E, 5f93:G, 5f97:A, 5f97:B, 5f97:C, 5f97:D, 5f9a:A, 5f9d:A
51 6cxo:A 465 32 0.2609 0.0258 0.3750 5.7 6cxo:B
52 3s6x:B 295 14 0.1739 0.0271 0.5714 7.2 3s6x:A, 3s6x:C, 3s6y:A, 3s6y:C, 3s6y:B, 3s6z:A, 3s6z:C
53 6sau:B 442 32 0.2609 0.0271 0.3750 7.9 6sau:A
54 1emn:A 82 33 0.2826 0.1585 0.3939 9.4 1emo:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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