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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIE

The query sequence (length=65) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2zcz:A 73 65 1.0000 0.8904 1.0000 1.40e-42 1c9s:L, 1c9s:M, 1c9s:N, 1c9s:O, 1c9s:P, 1c9s:Q, 1c9s:R, 1c9s:S, 1c9s:T, 1c9s:U, 1c9s:V, 1c9s:A, 1c9s:K, 1c9s:B, 1c9s:C, 1c9s:D, 1c9s:E, 1c9s:F, 1c9s:G, 1c9s:H, 1c9s:I, 1c9s:J, 5eeu:L, 5eeu:M, 5eeu:N, 5eeu:O, 5eeu:P, 5eeu:Q, 5eeu:R, 5eeu:S, 5eeu:T, 5eeu:U, 5eeu:V, 5eeu:A, 5eeu:B, 5eeu:C, 5eeu:D, 5eeu:E, 5eeu:F, 5eeu:G, 5eeu:H, 5eeu:I, 5eeu:J, 5eeu:K, 5eev:L, 5eev:M, 5eev:N, 5eev:O, 5eev:P, 5eev:Q, 5eev:R, 5eev:S, 5eev:T, 5eev:U, 5eev:V, 5eev:A, 5eev:B, 5eev:C, 5eev:D, 5eev:E, 5eev:F, 5eev:G, 5eev:H, 5eev:I, 5eev:J, 5eev:K, 5eew:L, 5eew:M, 5eew:N, 5eew:O, 5eew:P, 5eew:Q, 5eew:R, 5eew:S, 5eew:T, 5eew:U, 5eew:V, 5eew:A, 5eew:B, 5eew:C, 5eew:D, 5eew:E, 5eew:F, 5eew:G, 5eew:H, 5eew:I, 5eew:J, 5eew:K, 5eex:L, 5eex:M, 5eex:N, 5eex:O, 5eex:P, 5eex:Q, 5eex:R, 5eex:S, 5eex:T, 5eex:U, 5eex:V, 5eex:A, 5eex:B, 5eex:C, 5eex:D, 5eex:E, 5eex:F, 5eex:G, 5eex:H, 5eex:I, 5eex:J, 5eex:K, 5eey:L, 5eey:M, 5eey:N, 5eey:O, 5eey:P, 5eey:Q, 5eey:R, 5eey:S, 5eey:T, 5eey:U, 5eey:V, 5eey:A, 5eey:B, 5eey:C, 5eey:D, 5eey:E, 5eey:F, 5eey:G, 5eey:H, 5eey:I, 5eey:J, 5eey:K, 5eez:L, 5eez:M, 5eez:N, 5eez:O, 5eez:P, 5eez:Q, 5eez:R, 5eez:S, 5eez:T, 5eez:U, 5eez:V, 5eez:A, 5eez:B, 5eez:C, 5eez:D, 5eez:E, 5eez:F, 5eez:G, 5eez:H, 5eez:I, 5eez:J, 5eez:K, 5ef0:L, 5ef0:M, 5ef0:N, 5ef0:O, 5ef0:P, 5ef0:Q, 5ef0:R, 5ef0:S, 5ef0:T, 5ef0:U, 5ef0:V, 5ef0:A, 5ef0:B, 5ef0:C, 5ef0:D, 5ef0:E, 5ef0:F, 5ef0:G, 5ef0:H, 5ef0:I, 5ef0:J, 5ef0:K, 5ef1:L, 5ef1:M, 5ef1:N, 5ef1:O, 5ef1:P, 5ef1:Q, 5ef1:R, 5ef1:S, 5ef1:T, 5ef1:U, 5ef1:V, 5ef1:A, 5ef1:B, 5ef1:C, 5ef1:D, 5ef1:E, 5ef1:F, 5ef1:G, 5ef1:H, 5ef1:I, 5ef1:J, 5ef1:K, 5ef2:L, 5ef2:M, 5ef2:N, 5ef2:O, 5ef2:P, 5ef2:Q, 5ef2:R, 5ef2:S, 5ef2:T, 5ef2:U, 5ef2:V, 5ef2:A, 5ef2:B, 5ef2:C, 5ef2:D, 5ef2:E, 5ef2:F, 5ef2:G, 5ef2:H, 5ef2:I, 5ef2:J, 5ef2:K, 5ef3:L, 5ef3:M, 5ef3:N, 5ef3:O, 5ef3:P, 5ef3:Q, 5ef3:R, 5ef3:S, 5ef3:T, 5ef3:U, 5ef3:V, 5ef3:A, 5ef3:B, 5ef3:C, 5ef3:D, 5ef3:E, 5ef3:F, 5ef3:G, 5ef3:H, 5ef3:I, 5ef3:J, 5ef3:K, 2exs:A, 2exs:B, 2exs:C, 2ext:A, 2ext:B, 2ext:C, 1gtf:L, 1gtf:M, 1gtf:N, 1gtf:O, 1gtf:P, 1gtf:Q, 1gtf:R, 1gtf:S, 1gtf:T, 1gtf:U, 1gtf:V, 1gtf:A, 1gtf:K, 1gtf:B, 1gtf:C, 1gtf:D, 1gtf:E, 1gtf:F, 1gtf:G, 1gtf:H, 1gtf:I, 1gtf:J, 1gtn:L, 1gtn:M, 1gtn:N, 1gtn:O, 1gtn:P, 1gtn:Q, 1gtn:R, 1gtn:S, 1gtn:T, 1gtn:U, 1gtn:V, 1gtn:A, 1gtn:K, 1gtn:B, 1gtn:C, 1gtn:D, 1gtn:E, 1gtn:F, 1gtn:G, 1gtn:H, 1gtn:I, 1gtn:J, 1qaw:A, 1qaw:B, 1qaw:C, 1qaw:D, 1qaw:E, 1qaw:F, 1qaw:G, 1qaw:H, 1qaw:I, 1qaw:J, 1qaw:K, 1utd:L, 1utd:M, 1utd:N, 1utd:O, 1utd:P, 1utd:Q, 1utd:R, 1utd:S, 1utd:T, 1utd:U, 1utd:V, 1utd:A, 1utd:B, 1utd:C, 1utd:D, 1utd:E, 1utd:F, 1utd:G, 1utd:H, 1utd:I, 1utd:J, 1utd:K, 4v4f:AA, 4v4f:AK, 4v4f:AB, 4v4f:AC, 4v4f:AD, 4v4f:AE, 4v4f:AF, 4v4f:AG, 4v4f:AH, 4v4f:AI, 4v4f:AJ, 4v4f:BA, 4v4f:BK, 4v4f:BB, 4v4f:BC, 4v4f:BD, 4v4f:BE, 4v4f:BF, 4v4f:BG, 4v4f:BH, 4v4f:BI, 4v4f:BJ, 4v4f:AL, 4v4f:AV, 4v4f:AM, 4v4f:AN, 4v4f:AO, 4v4f:AP, 4v4f:AQ, 4v4f:AR, 4v4f:AS, 4v4f:AT, 4v4f:AU, 4v4f:BL, 4v4f:BV, 4v4f:BM, 4v4f:BN, 4v4f:BO, 4v4f:BP, 4v4f:BQ, 4v4f:BR, 4v4f:BS, 4v4f:BT, 4v4f:BU, 2zcz:B, 2zcz:C, 2zcz:D, 2zcz:E, 2zcz:F, 2zd0:A, 2zd0:B, 2zd0:C, 2zp8:A, 2zp8:B, 2zp8:C, 2zp8:D, 2zp9:A, 2zp9:B, 2zp9:F, 2zp9:G, 2zp9:K, 2zp9:L, 3zzs:A, 3zzs:B, 3zzs:C, 3zzs:D, 3zzs:E, 3zzs:F, 3zzs:G, 3zzs:H, 3zzs:I
2 3zte:L 70 62 0.8154 0.7571 0.8548 1.36e-34 4b27:A, 4b27:B, 4b27:C, 4b27:D, 4b27:E, 4b27:F, 1wap:A, 1wap:K, 1wap:B, 1wap:C, 1wap:D, 1wap:E, 1wap:F, 1wap:G, 1wap:H, 1wap:I, 1wap:J, 1wap:L, 1wap:V, 1wap:M, 1wap:N, 1wap:O, 1wap:P, 1wap:Q, 1wap:R, 1wap:S, 1wap:T, 1wap:U, 3zte:A, 3zte:K, 3zte:B, 3zte:C, 3zte:D, 3zte:E, 3zte:F, 3zte:G, 3zte:H, 3zte:I, 3zte:J, 3zte:V, 3zte:M, 3zte:N, 3zte:O, 3zte:P, 3zte:Q, 3zte:R, 3zte:S, 3zte:T, 3zte:U, 3zzq:A, 3zzq:B, 3zzq:C, 3zzq:D, 3zzq:E, 3zzq:F
3 3zzl:A 70 65 0.7538 0.7000 0.7538 9.61e-33 3zzl:B, 3zzl:C
4 6i97:A 763 35 0.1846 0.0157 0.3429 6.3 8b43:A, 6i96:A, 6i97:B, 6i98:A, 6z8a:A
5 4ha3:A 489 15 0.1538 0.0204 0.6667 6.4 4ha4:A
6 4cyg:A 463 22 0.1231 0.0173 0.3636 6.7 4cyg:B, 7slv:A, 7slx:A, 7sly:A
7 6gsz:A 863 36 0.2000 0.0151 0.3611 8.7
8 3juv:A 448 34 0.1692 0.0246 0.3235 9.4 3jus:B, 3jus:A, 3ld6:B, 3ld6:A, 6q2t:A, 6q2t:B, 8sbi:A, 8sbi:B, 8ss0:A, 8ss0:B, 6uez:A, 6uez:B, 4uhi:A, 4uhi:B, 4uhi:C, 4uhi:D, 4uhl:A, 4uhl:F, 4uhl:B, 4uhl:C, 4uhl:D, 4uhl:E, 4uhl:G, 4uhl:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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