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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SDEIVWQVINQSFCSHRIKAPNGQNFCRNEYNVTGLCTRQSCPLANSKYATVKCDNGKLYLYMKTPERAHTPAKLWERIK
LSKNYTKALQQIDEHLLHWSKFFRHKCKQRFTKLTQVMITERRLALREEERHYVGVAPKVKRREQNRERKALVAAKIEKA
IEKELMDRLKSGAYGDKPLNVDEKVWKKIM

The query sequence (length=190) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6c0f:D 190 190 1.0000 1.0000 1.0000 8.36e-144 6cb1:D, 8e5t:D, 6em1:3, 6em3:3, 6em4:3, 6em5:3, 7ohs:3, 7ohw:3, 7ohx:3, 8v83:R, 8v84:R, 5z3g:Z
2 8eup:3 194 189 0.6474 0.6340 0.6508 1.04e-89 8esq:3, 8etc:3, 8etg:3, 8eth:3, 8eti:3, 8etj:3, 8eug:3, 8eui:3, 8euy:3, 8ev3:3
3 8i9p:Ce 194 194 0.6158 0.6031 0.6031 2.26e-85 8i9r:Ce, 8i9t:Ce, 8i9v:Ce
4 8fkp:NM 182 177 0.5368 0.5604 0.5763 6.55e-65 8fkr:NM, 8fkt:NM, 8fkv:NM
5 2xt3:A 300 91 0.1368 0.0867 0.2857 1.1 4a14:A
6 4c5i:A 423 110 0.1211 0.0544 0.2091 6.3
7 6yxx:EN 638 95 0.1211 0.0361 0.2421 8.0 6yxy:EN
8 8h1c:B 983 39 0.0842 0.0163 0.4103 10.0 8h1c:A, 7xjz:A, 7xk0:A, 7xk1:A, 7xk1:C
9 3uej:A 65 76 0.0842 0.2462 0.2105 10.0 7knd:A, 7knj:A, 7ko6:A, 7l92:A, 7l92:D, 7l92:G, 7l92:J, 7l92:M, 7l92:V, 7l92:P, 7l92:S, 7lcb:A, 7leo:A, 7leo:D, 7lf3:A, 1ptq:A, 1ptr:A, 3uej:B, 3uey:A, 3uey:B, 3uff:A, 3uff:B, 3ugd:A, 3ugd:B, 3ugi:A, 3ugi:B, 3ugl:A, 3ugl:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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