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BioLiP
>protein
SDADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQN

The query sequence (length=73) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1hlo:A 80 73 1.0000 0.9125 1.0000 1.23e-48
2 5eyo:C 88 71 0.9726 0.8068 1.0000 1.80e-47 1an2:A, 5eyo:A, 1hlo:B, 1nkp:B, 1nkp:E, 1nlw:B, 1nlw:E
3 5i50:B 96 70 0.4384 0.3333 0.4571 3.81e-14 5i50:A, 1nkp:A, 1nkp:D
4 1an4:A 65 63 0.3562 0.4000 0.4127 3.91e-09 1an4:B
5 8ia3:E 111 71 0.3288 0.2162 0.3380 1.50e-07 8ia3:A, 8ia3:B, 8ia3:F
6 1am9:C 82 65 0.2877 0.2561 0.3231 3.63e-06 1am9:D, 1am9:A, 1am9:B
7 8osb:B 66 51 0.2329 0.2576 0.3333 8.16e-06
8 8hov:A 87 74 0.3014 0.2529 0.2973 2.19e-04 8hov:C, 8hov:B, 8hov:D, 8hov:E, 8hov:F
9 7f2f:B 94 71 0.2466 0.1915 0.2535 6.79e-04 7f2f:A
10 8ow1:B 116 48 0.2466 0.1552 0.3750 7.14e-04 8ovw:A, 8ovw:B, 8ow0:A, 8ow0:B, 8ow1:A, 7ssa:L, 7ssa:K
11 1mdy:A 68 55 0.2055 0.2206 0.2727 0.004 1mdy:B, 1mdy:C, 1mdy:D
12 5gnj:B 77 51 0.2329 0.2208 0.3333 0.005 5gnj:G, 5gnj:I, 5gnj:A, 5gnj:E, 5gnj:F, 5gnj:M, 5gnj:N
13 1nlw:A 79 70 0.3014 0.2785 0.3143 0.026 1nlw:D
14 7xq5:A 75 67 0.2603 0.2533 0.2836 0.027
15 7xi3:A 287 55 0.2466 0.0627 0.3273 0.037
16 4zpr:A 235 57 0.2055 0.0638 0.2632 0.052
17 4a15:A 596 68 0.2192 0.0268 0.2353 0.096 5h8w:A, 2vsf:A
18 7xi4:A 283 62 0.2740 0.0707 0.3226 0.12 8g4a:A, 8g4a:B, 5nj8:B, 5sy7:A, 5v0l:A, 7xhv:A, 4zph:A, 4zpk:A
19 7d8t:A 199 55 0.2192 0.0804 0.2909 0.37 4ati:A, 4ati:B, 4atk:A, 4atk:B, 7d8t:B, 6g1l:A, 8vu0:A, 8vu0:B
20 7z5i:A 56 52 0.1644 0.2143 0.2308 0.71 7z5i:B, 7z5k:A, 7z5k:B
21 8osk:M 316 70 0.2466 0.0570 0.2571 0.85 4h10:B, 8osl:M, 8osl:O
22 6vrb:A 1031 27 0.1781 0.0126 0.4815 0.92
23 6vrc:A 1007 27 0.1781 0.0129 0.4815 0.94
24 7aor:al 292 23 0.1507 0.0377 0.4783 1.3 6hiv:DL, 6hiw:DL
25 1a0a:A 63 62 0.2055 0.2381 0.2419 1.4 1a0a:B
26 5nj8:D 134 53 0.2055 0.1119 0.2830 1.6
27 3afv:A 439 37 0.1507 0.0251 0.2973 3.7 2d3q:A, 2d3q:B, 3mm1:A, 3mm2:A, 3mm3:A, 3vxi:A, 3vxj:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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