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BioLiP
>protein
SCYIYWDKIKRIASRLEGMNYHFDEMDTSGVMPLLDEIEEIAHDSTIDFESAKHILDDAEMNHALSLIRKFYVNLGMKLQ
MEKAQEVIESDSPWETLRSFYFYPRYLELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAEL
SRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAALAEPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDITG
FRRAGVVLPSGKVNNTSVLVFKCP

The query sequence (length=264) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3fpj:B 265 264 1.0000 0.9962 1.0000 0.0 3fpe:A, 3fpe:B, 3fpf:A, 3fpf:B, 3fph:A, 3fph:B, 3fpj:A, 3o31:A, 3o31:B
2 3gwz:A 339 117 0.1364 0.1062 0.3077 0.020 3gwz:D, 3gwz:C, 3gwz:B, 3gxo:A, 3gxo:D, 3gxo:C, 3gxo:B
3 1jg1:A 215 158 0.1477 0.1814 0.2468 0.38 1jg2:A, 1jg3:A, 1jg3:B, 1jg4:A
4 6gua:A 821 59 0.0606 0.0195 0.2712 1.0 6gua:B, 6gua:C, 6gua:D, 6gua:E, 6gua:F, 6gua:G, 6gua:H
5 1dl5:A 317 61 0.0758 0.0631 0.3279 1.2 1dl5:B
6 7c9k:B 233 48 0.0455 0.0515 0.2500 1.3 7c9k:A
7 1vtm:P 158 109 0.1023 0.1709 0.2477 1.3
8 7swl:E 480 91 0.0871 0.0479 0.2527 1.3
9 7c9m:C 260 48 0.0455 0.0462 0.2500 1.4 7c7m:A, 7c9m:A, 7c9m:B, 7c9m:D
10 6mat:A 578 91 0.0871 0.0398 0.2527 1.9 6mat:C, 6mat:E, 6mat:B, 6mat:D, 6mat:F, 7swl:A, 7swl:B, 7swl:C, 7swl:D, 7t0v:A, 7t0v:B, 7t0v:C, 7t0v:D, 7t0v:E, 7t0v:F, 7t3i:A, 7t3i:B, 7t3i:C, 7t3i:E, 7t3i:D
11 6ywe:8 331 92 0.0947 0.0755 0.2717 2.0 6yws:8, 6ywv:8, 6ywx:8, 6ywy:8
12 5e72:A 323 84 0.0909 0.0743 0.2857 2.4
13 6am0:A 260 98 0.0985 0.1000 0.2653 3.0 6am0:E, 5lop:A
14 4q4a:A 572 75 0.0682 0.0315 0.2400 7.7 3qf4:A, 6quz:A, 6quz:C, 6qv0:A, 6qv0:C, 6qv1:A, 6qv1:C, 6qv2:A, 6qv2:C
15 5jbx:B 261 65 0.0606 0.0613 0.2462 8.6 5jbx:A
16 6i3d:B 218 35 0.0455 0.0550 0.3429 8.8 3a7e:A, 3bwm:A, 3bwy:A, 6i3c:A, 6i3d:A, 5lsa:A, 4pyj:A, 4pyk:A, 4xuc:A, 4xud:A, 4xue:B, 4xue:A
17 4mix:B 277 70 0.0644 0.0614 0.2429 8.8 4mix:A
18 3ll3:A 492 73 0.0720 0.0386 0.2603 9.3 3ll3:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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