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BioLiP
>protein
SCFALISGTANQVKCYRFRVKKNHRHRYENCTTTWFTVADNGAERQGQAQILITFGSPSQRQDFLKHVPLPPGMNISGFT
ASLDF

The query sequence (length=85) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2bop:A 85 85 1.0000 1.0000 1.0000 5.57e-62
2 2ayb:A 87 67 0.2588 0.2529 0.3284 6.14e-10 2ayb:B, 2ayg:A, 2ayg:B
3 1jj4:B 76 71 0.2471 0.2763 0.2958 1.81e-06 1jj4:A
4 4y0v:A 165 66 0.2471 0.1273 0.3182 0.12 4y0v:B, 4ylg:A, 4ylg:B
5 5a03:C 336 28 0.1294 0.0327 0.3929 2.0 5a02:A, 5a02:B, 5a02:C, 5a02:D, 5a02:E, 5a02:F, 5a03:A, 5a03:B, 5a03:D, 5a03:E, 5a03:F, 5a04:A, 5a04:B, 5a04:C, 5a04:D, 5a04:E, 5a04:F, 5a05:A, 5a05:C, 5a05:D, 5a05:E, 5a05:B, 5a05:F, 5a06:A, 5a06:B, 5a06:C, 5a06:D, 5a06:E, 5a06:F
6 6zu5:SW0 127 47 0.1765 0.1181 0.3191 2.1
7 8osi:A 400 39 0.1412 0.0300 0.3077 2.2
8 6xw2:A 387 39 0.1412 0.0310 0.3077 4.0
9 5n6n:C 698 36 0.1294 0.0158 0.3056 4.0 5m4a:A
10 1f9c:A 360 20 0.0941 0.0222 0.4000 4.5 1f9c:B, 1muc:A, 1muc:B, 2muc:A, 2muc:B, 3muc:A, 3muc:B
11 7kv8:A 493 41 0.1412 0.0243 0.2927 5.3 7kv8:B, 7kv8:C, 5n09:A, 5n09:B, 5n0a:A, 5n0a:B, 1oan:A, 1oan:B, 1oke:A, 1oke:B, 4ut6:A, 4ut6:B, 4uta:A, 4utb:A, 4utb:B, 4utc:A, 4utc:B
12 2aj4:A 509 38 0.1294 0.0216 0.2895 6.4 2aj4:B
13 2ilu:A 477 26 0.1059 0.0189 0.3462 7.2 2imp:A, 2opx:A
14 5eqg:A 447 37 0.1647 0.0313 0.3784 8.9 5eqh:A, 5eqi:A
15 4zdj:A 535 54 0.1882 0.0299 0.2963 9.2 4zdk:A, 4zdk:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417