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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SCAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVAGAAAHCASVGDIVIIASFVTMPDEEARTWRPN
VAYFEGDNEMKRTA

The query sequence (length=94) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4cry:G 102 94 0.9787 0.9020 0.9787 3.10e-64 7a8y:BBB, 7a8y:EaE, 4aok:B, 4aok:E, 4aon:B, 4aon:E, 1aw8:B, 1aw8:E, 4d7z:B, 5ls7:D, 1pyu:B, 1pyu:D, 6rxh:B, 6rxh:E, 3tm7:B, 3tm7:D
2 1vc3:B 96 87 0.4362 0.4271 0.4713 4.10e-26 2eeo:B
3 6p1y:B 102 86 0.4149 0.3824 0.4535 1.52e-23 6oyy:B, 6oyy:D, 6oyy:J, 6oyy:L, 6oyy:F, 6oyy:H, 6oz8:B, 6oz8:D, 6oz8:J, 6oz8:L, 6oz8:F, 6oz8:H, 6p02:B, 6p02:D, 6p02:F, 6p02:H, 6p02:J, 6p02:L, 6p02:N, 6p02:P, 6p02:R, 6p02:T, 6p02:V, 6p02:X
4 3plx:B 101 86 0.4043 0.3762 0.4419 1.63e-20
5 1uhe:A 97 88 0.3511 0.3402 0.3750 2.07e-14 1uhd:A
6 5e4r:A 466 31 0.1596 0.0322 0.4839 0.58 4xdz:A, 4xdz:B
7 5e4r:A 466 31 0.1596 0.0322 0.4839 0.58 4xdz:A, 4xdz:B
8 6pmi:F 239 42 0.1596 0.0628 0.3571 1.5 6pmj:F
9 6lgv:A 311 18 0.1277 0.0386 0.6667 2.1 6lgy:A, 6lgz:A, 6lh0:A, 6lh1:A, 4n7w:A, 4n7w:B
10 7oqh:D 364 56 0.1809 0.0467 0.3036 3.2 7oqh:A, 7oqh:B, 7oqh:C, 7oqh:E, 7oqh:F
11 1lgr:A 445 20 0.0957 0.0202 0.4500 3.8 1lgr:B, 1lgr:C, 1lgr:D, 1lgr:E, 1lgr:F, 1lgr:G, 1lgr:H, 1lgr:I, 1lgr:J, 1lgr:K, 1lgr:L, 2lgs:A, 2lgs:B, 2lgs:C, 2lgs:D, 2lgs:E, 2lgs:F, 2lgs:G, 2lgs:H, 2lgs:I, 2lgs:J, 2lgs:K, 2lgs:L
12 1f1h:A 468 20 0.0957 0.0192 0.4500 3.9 1f1h:B, 1f1h:C, 1f1h:D, 1f1h:E, 1f1h:F, 1f1h:G, 1f1h:H, 1f1h:I, 1f1h:J, 1f1h:K, 1f1h:L, 1f52:A, 1f52:B, 1f52:C, 1f52:D, 1f52:E, 1f52:F, 1f52:G, 1f52:H, 1f52:I, 1f52:J, 1f52:K, 1f52:L, 1fpy:A, 1fpy:B, 1fpy:C, 1fpy:D, 1fpy:E, 1fpy:F, 1fpy:G, 1fpy:H, 1fpy:I, 1fpy:J, 1fpy:K, 1fpy:L, 2gls:A, 2gls:B, 2gls:C, 2gls:D, 2gls:E, 2gls:F, 2gls:G, 2gls:H, 2gls:I, 2gls:J, 2gls:K, 2gls:L
13 5juy:B 1234 45 0.1702 0.0130 0.3556 4.2 1cy5:A, 3j2t:A, 3j2t:B, 3j2t:C, 3j2t:D, 3j2t:E, 3j2t:F, 3j2t:G, 3jbt:A, 3jbt:C, 3jbt:E, 3jbt:G, 3jbt:I, 3jbt:K, 3jbt:M, 5juy:A, 5juy:C, 5juy:D, 5juy:E, 5juy:F, 5juy:G, 2p1h:A, 5wve:A, 5wve:C, 5wve:E, 5wve:G, 5wve:I, 5wve:K, 5wve:M, 1z6t:A, 1z6t:B, 1z6t:C, 1z6t:D
14 5yeq:B 329 15 0.1064 0.0304 0.6667 5.1
15 7naf:B 190 60 0.2021 0.1000 0.3167 5.4
16 6tbu:A 842 50 0.1702 0.0190 0.3200 5.5
17 7q41:A 369 20 0.1064 0.0271 0.5000 8.1 7q41:C, 7q41:E, 7q42:C, 7q42:A, 7q42:E, 7q43:A, 7q43:C, 7q43:E, 7q44:C, 7q44:A, 7q44:E, 7q45:A, 7q45:C, 7q45:E, 7q46:C, 7q46:E, 7q46:A
18 2x4h:C 131 39 0.1277 0.0916 0.3077 8.8 2x4h:A, 2x4h:B, 2x4h:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417